(Q34452043)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25474575%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood (English)

1 reference

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24 February 2020

0 references

1 reference

Phlebiopsis gigantea

1 reference

11

1 reference

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24 February 2020

Monika Schmoll

12

1 reference

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24 February 2020

Igor V. Grigoriev

34

1 reference

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24 February 2020

Chiaki Hori

1

1 reference

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24 February 2020

Kiyohiko Igarashi

3

1 reference

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24 February 2020

Patricia Ferreira

7

1 reference

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24 February 2020

Francisco J Ruiz-Dueñas

8

1 reference

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24 February 2020

Paulo Canessa

10

1 reference

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24 February 2020

Franz J St John

17

1 reference

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24 February 2020

Andriy Kovalchuk

24

1 reference

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24 February 2020

Fred O. Asiegbu

25

1 reference

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24 February 2020

Jorge Rencoret

28

1 reference

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24 February 2020

Ana Gutiérrez

29

1 reference

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24 February 2020

Kerrie Barry

32

1 reference

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24 February 2020

Robert Riley

33

1 reference

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24 February 2020

Bernard Henrissat

35

1 reference

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24 February 2020

Ursula Kües

36

1 reference

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24 February 2020

Angel T. Martínez

38

1 reference

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24 February 2020

6

Emma Master

1 reference

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24 February 2020

4

Masahiro Samejima

1 reference

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24 February 2020

9

Benjamin Held

1 reference

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24 February 2020

15

Jill A Gaskell

1 reference

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24 February 2020

16

Phil Kersten

1 reference

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24 February 2020

19

Grzegorz Sabat

1 reference

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Sandra Splinter BonDurant

24 February 2020

20

object named as

Sandra Splinter BonDurant

1 reference

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24 February 2020

21

Khajamohiddin Syed

1 reference

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24 February 2020

22

Jagjit Yadav

1 reference

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24 February 2020

37

Randy M Berka

1 reference

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24 February 2020

40

Robert A Blanchette

1 reference

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24 February 2020

13

Irina S Druzhinina

1 reference

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24 February 2020

31

Erika Lindquist

1 reference

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24 February 2020

author name string

Takuya Ishida

2

1 reference

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24 February 2020

Hitoshi Suzuki

5

1 reference

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24 February 2020

Christian P Kubicek

14

1 reference

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24 February 2020

Jeremy Glasner

18

1 reference

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24 February 2020

Anthony C Mgbeahuruike

23

1 reference

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24 February 2020

Gerald Lackner

26

1 reference

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24 February 2020

Dirk Hoffmeister

27

1 reference

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24 February 2020

Hui Sun

30

1 reference

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24 February 2020

Sarah F Covert

39

1 reference

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24 February 2020

Daniel Cullen

41

1 reference

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24 February 2020

publication date

4 December 2014

1 reference

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24 February 2020

1 reference

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24 February 2020

volume

10

1 reference

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24 February 2020

issue

12

1 reference

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24 February 2020

page(s)

e1004759

1 reference

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Creative Commons CC0 License

24 February 2020

copyright license

start time

4 December 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

1 reference

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Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation.

6 July 2018

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Population genetic analyses provide insights on the introduction pathway and spread patterns of the North American forest pathogen Heterobasidion irregulare in Italy

6 July 2018

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Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism

6 July 2018

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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

6 July 2018

1 reference

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CYP63A2, a catalytically versatile fungal P450 monooxygenase capable of oxidizing higher-molecular-weight polycyclic aromatic hydrocarbons, alkylphenols, and alkanes

6 July 2018

1 reference

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Lcc1 and Lcc5 are the main laccases secreted in liquid cultures of Coprinopsis cinerea strains

6 July 2018

1 reference

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Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina

6 July 2018

1 reference

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Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

6 July 2018

1 reference

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

6 July 2018

1 reference

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P450 monooxygenases (P450ome) of the model white rot fungus Phanerochaete chrysosporium

6 July 2018

1 reference

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

6 July 2018

1 reference

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The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose.

6 July 2018

1 reference

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The genome portal of the Department of Energy Joint Genome Institute

6 July 2018

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Multiple multi-copper oxidase gene families in basidiomycetes - what for?

6 July 2018

1 reference

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Proteomic and functional analysis of the cellulase system expressed by Postia placenta during brown rot of solid wood.

6 July 2018

1 reference

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Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components

6 July 2018

1 reference

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Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61.

6 July 2018

1 reference

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The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

6 July 2018

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

6 July 2018

1 reference

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Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood

6 July 2018

1 reference

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Identification of a new member of Pleurotus ostreatus laccase family from mature fruiting body.

6 July 2018

1 reference

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An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

New and classic families of secreted fungal heme peroxidases.

6 July 2018

1 reference

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Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.

6 July 2018

1 reference

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An Antarctic hot spot for fungi at Shackleton's historic hut on Cape Royds

6 July 2018

1 reference

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Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Proteomic and metabolomic analyses of the white-rot fungus Phanerochaete chrysosporium exposed to exogenous benzoic acid

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Degradation of cellulose by basidiomycetous fungi

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Characteristics of Gloeophyllum trabeum alcohol oxidase, an extracellular source of H2O2 in brown rot decay of wood.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Identification and analysis of differentially expressed cDNAs during nonself-competitive interaction between Phlebiopsis gigantea and Heterobasidion parviporum.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Reactivities of various mediators and laccases with kraft pulp and lignin model compounds.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Biological Processing of Pine Logs for Pulp and Paper Production with Phlebiopsis gigantea

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Anisaldehyde and Veratraldehyde Acting as Redox Cycling Agents for H(2)O(2) Production by Pleurotus eryngii.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Metabolic regulation at the tricarboxylic acid and glyoxylate cycles of the lignin-degrading basidiomycete Phanerochaete chrysosporium against exogenous addition of vanillin.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Engineering of pyranose 2-oxidase from Peniophora gigantea towards improved thermostability and catalytic efficiency

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Isolation and purification of pyranose 2-oxidase from Phanerochaete chrysosporium and characterization of gene structure and regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Feature-based prediction of non-classical and leaderless protein secretion

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

A statistical model for identifying proteins by tandem mass spectrometry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

A novel extracellular multicopper oxidase from Phanerochaete chrysosporium with ferroxidase activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Mechanism of the reductive half-reaction in cellobiose dehydrogenase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Glyoxal oxidase of Phanerochaete chrysosporium: its characterization and activation by lignin peroxidase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

A physiological role for oxalic acid biosynthesis in the wood-rotting basidiomycete Fomitopsis palustris

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Fungal pyranose oxidases: occurrence, properties and biotechnical applications in carbohydrate chemistry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Glutathione S-transferases from the white-rot fungus, Phanerochaete chrysosporium

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Laccase is essential for lignin degradation by the white-rot fungus Pycnoporus cinnabarinus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium. Gene cloning, sequence analysis, expression, and purification of the recombinant enzyme.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

The neighbor-joining method: a new method for reconstructing phylogenetic trees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Progressive sequence alignment and molecular evolution of the Zn-containing alcohol dehydrogenase family

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

Delignification by Wood-Decay Fungi

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Tandem cytochrome P450 monooxygenase genes and splice variants in the white rot fungus Phanerochaete chrysosporium: cloning, sequence analysis, and regulation of differential expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Substrate oxidation by dye-decolorizing peroxidases (DyPs) from wood- and litter-degrading agaricomycetes compared to other fungal and plant heme-peroxidases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

A specialized ABC efflux transporter GcABC-G1 confers monoterpene resistance to Grosmannia clavigera, a bark beetle-associated fungal pathogen of pine trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Evolutionary Divergence and Convergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Microbial and enzymatic control of pitch in the pulp and paper industry

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256170

The laccase multi-gene family in Coprinopsis cinerea has seventeen different members that divide into two distinct subfamilies

27 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

21 January 2018

Decomposition of Wood

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004759

Combined sequence and structure analysis of the fungal laccase family

21 January 2018

1 reference

12 December 2020

Site-directed mutagenesis of selected residues at the active site of aryl-alcohol oxidase, an H2O2-producing ligninolytic enzyme

1 reference

12 December 2020

Molecular evolution and diversity of lignin degrading heme peroxidases in the Agaricomycetes

1 reference

12 December 2020

Elimination and detoxification of softwood extractives by white-rot fungi

1 reference

12 December 2020

Fungal Biotransformation Products of Dehydroabietic Acid

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1004759

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25474575%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25474575%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

25474575

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25474575%20AND%20SRC:MED&resulttype=core&format=json