(Q34461900)

2 August 2017

title

Effect of copper treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis (English)

1 reference

2 August 2017

main subject

Haliclona cymaeformis

object named as

Haliclona cymaeformis

1 reference

1 reference

7

1 reference

2 August 2017

Salim Bougouffa

3

0 references

author name string

Ren-Mao Tian

1

1 reference

2 August 2017

Yong Wang

2

1 reference

2 August 2017

Zhao-Ming Gao

4

1 reference

2 August 2017

Lin Cai

5

1 reference

2 August 2017

Wei-Peng Zhang

6

1 reference

2 August 2017

Pei-Yuan Qian

8

1 reference

2 August 2017

publication date

4 November 2014

1 reference

2 August 2017

1 reference

2 August 2017

volume

5

1 reference

2 August 2017

issue

6

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2 August 2017

page(s)

e01980

1 reference

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Complete genome sequence of Marinomonas bacteriophage P12026.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Gene and translation initiation site prediction in metagenomic sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Pyrosequencing of bacterial symbionts within Axinella corrugata sponges: diversity and seasonal variability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Fast gapped-read alignment with Bowtie 2

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

The Pfam protein families database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Copper toxicity and the origin of bacterial resistance--new insights and applications

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Integrative analysis of environmental sequences using MEGAN4

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Life in blue: copper resistance mechanisms of bacteria and archaea used in industrial biomining of minerals.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

CtpV: a putative copper exporter required for full virulence of Mycobacterium tuberculosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Copper homeostasis in Salmonella is atypical and copper-CueP is a major periplasmic metal complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

QIIME allows analysis of high-throughput community sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Prodigal: prokaryotic gene recognition and translation initiation site identification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

PyNAST: a flexible tool for aligning sequences to a template alignment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

The Sequence Alignment/Map format and SAMtools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Inter- and intraspecific variations of bacterial communities associated with marine sponges from san juan island, washington

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Sponge-associated microorganisms: evolution, ecology, and biotechnological potential

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Induction of temperate cyanophage AS-1 by heavy metal--copper.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

ACT: the Artemis Comparison Tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Microbial resistance to metals in the environment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

CopA: An Escherichia coli Cu(I)-translocating P-type ATPase.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

A delicate balance: homeostatic control of copper uptake and distribution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Current-induced flow through living sponges in nature

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4222105

Interdecadal variation in an antarctic sponge and its predators from oceanographic climate shifts

6 July 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

Antimicrobial activity of marine bacteria associated with sponges from the waters off the coast of South East India.

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

Interocean differences in size and nutrition of coral reef sponge populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

Sublethal effects of contamination on the Mediterranean sponge Crambe crambe: metal accumulation and biological responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

Accumulation of copper, zinc, cadmium and chromium by the marine sponge Halichondria panicea Pallas and the implications for biomonitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

The effects of copper on the microbial community of a coral reef sponge

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

An Anaerobic World in Sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1128%2FMBIO.01980-14

The independent cue and cus systems confer copper tolerance during aerobic and anaerobic growth in Escherichia coli

21 January 2018

1 reference

12 December 2020

Marine sponges as habitats of anaerobic phototrophic bacteria

1 reference

12 December 2020

Net primary productivity in coral reef sponges

1 reference

12 December 2020

Sponge-associated marine bacteria as indicators of heavy metal pollution

1 reference

12 December 2020

Contrasting Effects of Heavy Metals on Sponge Cell Behavior

1 reference

12 December 2020

Identifiers

DOI

10.1128/MBIO.01980-14

0 references

PMC publication ID

4222105

1 reference

2 August 2017

1 reference