(Q34466055)

2 August 2017

title

Lung cancer signature biomarkers: tissue specific semantic similarity based clustering of digital differential display (DDD) data (English)

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2 August 2017

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Mousami Srivastava

1

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2 August 2017

Pankaj Khurana

series ordinal

2

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2 August 2017

Ragumani Sugadev

series ordinal

3

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2 August 2017

publication date

2 November 2012

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2 August 2017

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2 August 2017

volume

5

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2 August 2017

page(s)

617

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What does systems biology mean for biomarker discovery?

2 August 2017

cites work

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6 July 2018

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6 July 2018

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6 July 2018

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Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network

6 July 2018

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Roles of coactivators in hypoxic induction of the erythropoietin gene

6 July 2018

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Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures

6 July 2018

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TiSGeD: a database for tissue-specific genes

6 July 2018

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GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

6 July 2018

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BRE over-expression promotes growth of hepatocellular carcinoma.

6 July 2018

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Identification of five candidate lung cancer biomarkers by proteomics analysis of conditioned media of four lung cancer cell lines

6 July 2018

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6 July 2018

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Nicotinamide phosphoribosyltransferase and prostaglandin H2 synthase 2 are up-regulated in human pancreatic adenocarcinoma cells after stimulation with interleukin-1.

6 July 2018

1 reference

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ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

6 July 2018

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Identification of discriminating biomarkers for human disease using integrative network biology

6 July 2018

1 reference

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Dynamic modularity in protein interaction networks predicts breast cancer outcome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

The increase in pulmonary arterial pressure caused by hypoxia depends on iron status

6 July 2018

1 reference

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Application of a global proteomic approach to archival precursor lesions: deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancer precursors

6 July 2018

1 reference

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Glycolysis module activated by hypoxia-inducible factor 1alpha is related to the aggressive phenotype of hepatocellular carcinoma.

6 July 2018

1 reference

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Gemcitabine and cytosine arabinoside cytotoxicity: association with lymphoblastoid cell expression

6 July 2018

1 reference

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Antizyme suppression leads to an increment of the cellular redox potential and an induction of HIF-1alpha: its involvement in resistance to gamma-radiation

6 July 2018

1 reference

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Amyloid precursor-like protein 1 is differentially upregulated in neuroendocrine tumours of the gastrointestinal tract

6 July 2018

1 reference

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Regulation of hypoxia-inducible genes by ETS1 transcription factor

6 July 2018

1 reference

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Transglutaminase 2 protects against ischemic insult, interacts with HIF1beta, and attenuates HIF1 signaling

6 July 2018

1 reference

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Candidate gene identification approach: progress and challenges

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

SAG/ROC2/RBX2 is a HIF-1 target gene that promotes HIF-1 alpha ubiquitination and degradation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Silencing of Lactotransferrin expression by methylation in prostate cancer progression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Hypoxic induction of human visfatin gene is directly mediated by hypoxia-inducible factor-1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

The role of copper in development of drug resistance in murine carcinoma

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Identification of novel target genes by an epigenetic reactivation screen of renal cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Permissive effects of oxygen on cyclic AMP and interleukin-1 stimulation of surfactant protein A gene expression are mediated by epigenetic mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Identification of putative oncogenes in lung adenocarcinoma by a comprehensive functional genomic approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

In silico comparison of gene expression levels in ten human tumor types reveals candidate genes associated with carcinogenesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

CpG immunomer DNA enhances antisense protein kinase A RIalpha inhibition of multidrug-resistant colon carcinoma growth in nude mice: molecular basis for combinatorial therapy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

A knowledge-driven approach to cluster validity assessment.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Intracellular trafficking pathways and drug delivery: fluorescence imaging of living and fixed cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

TIR-containing adapter molecule (TICAM)-2, a bridging adapter recruiting to toll-like receptor 4 TICAM-1 that induces interferon-beta.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Increased levels of tyrosinated alpha-, beta(III)-, and beta(IV)-tubulin isotypes in paclitaxel-resistant MCF-7 breast cancer cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Low oxygen tension stimulates collagen synthesis and COL1A1 transcription through the action of TGF-beta1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Down-regulation of E-cadherin gene expression by collagen type I and type III in pancreatic cancer cell lines

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Cancer gene discovery using digital differential display.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

The Expression and Distribution of the Hypoxia-Inducible Factors HIF-1α and HIF-2α in Normal Human Tissues, Cancers, and Tumor-Associated Macrophages

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Redox-regulated recruitment of the transcriptional coactivators CREB-binding protein and SRC-1 to hypoxia-inducible factor 1alpha

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Coordination of genetic, epigenetic, and environmental factors in lung development, injury, and repair

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Hypoxia-associated proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Changes of Fibronectin in the Right and Left Ventricles of Rats Exposed to Chronic Normobaric Hypoxia

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Casein kinase 1 regulates human hypoxia-inducible factor HIF-1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Glycoproteomic analysis of human lung adenocarcinomas using glycoarrays and tandem mass spectrometry: differential expression and glycosylation patterns of vimentin and fetuin A isoforms.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Altered iron metabolism, inflammation, transferrin receptors, and ferritin expression in non-small-cell lung cancer.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Hypoxia-mediated up-regulation of MGr1-Ag/37LRP in gastric cancers occurs via hypoxia-inducible-factor 1-dependent mechanism and contributes to drug resistance.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Protein expression and amplification of AIB1 in human urothelial carcinoma of the bladder and overexpression of AIB1 is a new independent prognostic marker of patient survival

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Pvclust: an R package for assessing the uncertainty in hierarchical clustering.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Breast cancer cells isolated by chemotaxis from primary tumors show increased survival and resistance to chemotherapy

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3532198

Enhanced expression of a glyceraldehyde-3-phosphate dehydrogenase gene in human lung cancers

27 October 2018

1 reference

12 December 2020

Vesicular transport: the core machinery of COPI recruitment and budding

1 reference

12 December 2020

Use of an immunoaffinity-mass spectrometry-based approach for the quantification of protein biomarkers from serum samples of lung cancer patients

1 reference

12 December 2020

Fibronectin is distinctly downregulated in murine mammary adenocarcinoma cells with high metastatic potential

1 reference

12 December 2020

An integrated bioinformatics analysis of mouse testis protein profiles with new understanding

1 reference

12 December 2020

Identifiers

DOI

10.1186/1756-0500-5-617

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

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