(Q34468335)

2 August 2017

title

LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons (English)

1 reference

2 August 2017

0 references

1 reference

graphical user interface

1 reference

Sascha Steinbiss

1

1 reference

2 August 2017

Sascha Kastens

series ordinal

2

1 reference

2 August 2017

Stefan Kurtz

series ordinal

3

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2 August 2017

publication date

7 November 2012

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2 August 2017

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2 August 2017

volume

3

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2 August 2017

issue

1

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2 August 2017

page(s)

18

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GenomeTools: a comprehensive software library for efficient processing of structured genome annotations

2 August 2017

cites work

1 reference

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Mosquitoes LTR retrotransposons: a deeper view into the genomic sequence of Culex quinquefasciatus

6 July 2018

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6 July 2018

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A new efficient data structure for storage and retrieval of multiple biosequences

6 July 2018

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BEL/Pao retrotransposons in metazoan genomes

6 July 2018

1 reference

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Adaptive seeds tame genomic sequence comparison

6 July 2018

1 reference

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ModuleOrganizer: detecting modules in families of transposable elements

6 July 2018

1 reference

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LTR retroelements in the genome of Daphnia pulex

6 July 2018

1 reference

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Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Identification of novel LTR retrotransposons in the genome of Aedes aegypti

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

AnnotationSketch: a genome annotation drawing library

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

VisualRepbase: an interface for the study of occurrences of transposable element families

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

The opossum genome: insights and opportunities from an alternative mammal

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Endogenous retroviruses of the chicken genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

A unified classification system for eukaryotic transposable elements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Discovering and detecting transposable elements in genome sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Clustal W and Clustal X version 2.0

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

De novo identification of LTR retrotransposons in eukaryotic genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Repbase Update, a database of eukaryotic repetitive elements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

The Sequence Ontology: a tool for the unification of genome annotations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Long terminal repeat retrotransposons of Mus musculus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Initial sequencing and comparative analysis of the mouse genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Long terminal repeat retrotransposons of Oryza sativa

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Reverse transcription of retroviruses and LTR retrotransposons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Initial sequencing and analysis of the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

A sequence immediately upstream of the plus-strand primer is essential for plus-strand DNA synthesis of the Saccharomyces cerevisiae Ty1 retrotransposon

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Primer tRNAs for reverse transcription

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

tRNAs as primer of reverse transcriptases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Eukaryotic transposable elements and genome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

Fine-grained annotation and classification of de novo predicted LTR retrotransposons.

6 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1759-8753-3-18

LTR_STRUC: a novel search and identification program for LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1759-8753-3-18

Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1759-8753-3-18

TEclass--a tool for automated classification of unknown eukaryotic transposable elements.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1759-8753-3-18

Automatic classification within families of transposable elements: application to the mariner Family.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1759-8753-3-18

A universal classification of eukaryotic transposable elements implemented in Repbase.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

A unified classification system for eukaryotic transposable elements should reflect their phylogeny

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582472

9 December 2018

Identifiers

DOI

10.1186/1759-8753-3-18

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference