(Q34471588)

2 August 2017

title

Hybrid incompatibility arises in a sequence-based bioenergetic model of transcription factor binding (English)

1 reference

2 August 2017

author name string

Alexander Y Tulchinsky

1

1 reference

2 August 2017

Norman A Johnson

2

1 reference

2 August 2017

Ward B Watt

3

1 reference

2 August 2017

Adam H Porter

4

1 reference

2 August 2017

language of work or name

English

0 references

publication date

29 August 2014

1 reference

2 August 2017

1 reference

2 August 2017

volume

198

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2 August 2017

issue

3

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2 August 2017

page(s)

1155-1166

1 reference

Physical constraints determine the logic of bacterial promoter architectures.

2 August 2017

cites work

1 reference

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DNA-binding specificity changes in the evolution of forkhead transcription factors

6 July 2018

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6 July 2018

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Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression data.

6 July 2018

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Probing the informational and regulatory plasticity of a transcription factor DNA-binding domain

6 July 2018

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Cis-by-Trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene

6 July 2018

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Allelic imbalance in Drosophila hybrid heads: exons, isoforms, and evolution

6 July 2018

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Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

6 July 2018

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Evolutionary origins of transcription factor binding site clusters

6 July 2018

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The genetics of hybrid incompatibilities

6 July 2018

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Hybrid incompatibility genes: remnants of a genomic battlefield?

6 July 2018

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The molecular evolutionary basis of species formation

6 July 2018

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The biology of speciation

6 July 2018

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Rapid sequence evolution of transcription factors controlling neuron differentiation in Caenorhabditis

6 July 2018

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From DNA sequence to transcriptional behaviour: a quantitative approach

6 July 2018

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Statistical mechanics of convergent evolution in spatial patterning

6 July 2018

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Incorporating nucleosomes into thermodynamic models of transcription regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Dynamics of hybrid incompatibility in gene networks in a constant environment

6 July 2018

1 reference

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Evidence for ecological speciation and its alternative

6 July 2018

1 reference

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Ecological explanations for (incomplete) speciation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Between "design" and "bricolage": genetic networks, levels of selection, and adaptive evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

The evolutionary significance of cis-regulatory mutations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

EVOLUTION IN MENDELIAN POPULATIONS

6 July 2018

1 reference

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Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Gene expression divergence and the origin of hybrid dysfunctions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Quantitative modeling of DNA-protein interactions: effects of amino acid substitutions on binding specificity of the Mnt repressor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

The evolution of transcriptional regulation in eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Adaptation at specific loci. VII. Natural selection, dispersal and the diversity of molecular–functional variation patterns among butterfly species complexes (Colias: Lepidoptera, Pieridae)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Physical constraints and functional characteristics of transcription factor-DNA interaction.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Toward a new synthesis: population genetics and evolutionary developmental biology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Developmental system drift and flexibility in evolutionary trajectories

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

The population genetics of speciation: the evolution of hybrid incompatibilities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

On the specificity of DNA-protein interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Conditions for mutation-order speciation.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Genetic architecture and postzygotic reproductive isolation: evolution of Bateson-Dobzhansky-Muller incompatibilities in a polygenic model.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Evolution of branched regulatory genetic pathways: directional selection on pleiotropic loci accelerates developmental system drift.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Evolutionary changes in cis and trans gene regulation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Epistasis and pleiotropy as natural properties of transcriptional regulation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224158

Modeling the evolution of genetic architecture: A continuum of alleles model with pairwise AxA epistasis

27 October 2018

1 reference

12 December 2020

Rapid speciation via parallel, directional selection on regulatory genetic pathways

1 reference

12 December 2020

Modeling genetic architecture: a multilinear theory of gene interaction

1 reference

12 December 2020

The evolution of complex gene regulation by low-specificity binding sites

1 reference

12 December 2020

A Dynamical Theory of Speciation on Holey Adaptive Landscapes

1 reference

12 December 2020

Dramatic changes in DNA-binding specificity caused by single residue substitutions in an Arc/Mnt hybrid repressor

1 reference

12 December 2020

10.1534/GENETICS.114.168112

Identifiers

DOI

1 reference

2 August 2017

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2 August 2017

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