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DNA-binding specificity changes in the evolution of forkhead transcription factors
scientific article published on 08 July 2013
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3725104
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4 March 2020
title
DNA-binding specificity changes in the evolution of forkhead transcription factors
(English)
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3725104
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4 March 2020
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So Nakagawa
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1
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4 March 2020
Stephen S. Gisselbrecht
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4 March 2020
Julia M Rogers
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4 March 2020
Martha L Bulyk
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Martha L Bulyk
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4 March 2020
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Daniel L Hartl
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4
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language of work or name
English
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publication date
8 July 2013
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4 March 2020
published in
Proceedings of the National Academy of Sciences of the United States of America
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4 March 2020
volume
110
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4 March 2020
issue
30
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4 March 2020
page(s)
12349-12354
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4 March 2020
cites work
Differential regulation of mesodermal gene expression by Drosophila cell type-specific Forkhead transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Forkhead box N4 (Foxn4) activates Dll4-Notch signaling to suppress photoreceptor cell fates of early retinal progenitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
The Pfam protein families database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Accelerated Profile HMM Searches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
FastSP: linear time calculation of alignment accuracy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
ProtTest 3: fast selection of best-fit models of protein evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Structure of the FoxM1 DNA-recognition domain bound to a promoter sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Evolutionary genomics of the Fox genes: origin of gene families and the ancestry of gene clusters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Diversity and complexity in DNA recognition by transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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High-resolution DNA-binding specificity analysis of yeast transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
An improved general amino acid replacement matrix
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
Structure of the forkhead domain of FOXP2 bound to DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
enoLOGOS: a versatile web tool for energy normalized sequence logos
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
29 September 2017
MAFFT version 5: improvement in accuracy of multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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Conservation and evolution of cis-regulatory systems in ascomycete fungi
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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Identification and characterization of human FOXN5 and rat Foxn5 genes in silico
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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retrieved
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1 reference
stated in
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3725104
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1073%2FPNAS.1310430110
retrieved
21 January 2018
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1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23836653
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Evidence that the DNA binding specificity of winged helix proteins is mediated by a structural change in the amino acid sequence adjacent to the principal DNA binding helix
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23836653
retrieved
12 December 2020
based on heuristic
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Identifiers
DOI
10.1073/PNAS.1310430110
1 reference
stated in
Europe PubMed Central
PMCID
3725104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23836653%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
ADS bibcode
2013PNAS..11012349N
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PMCID
3725104
1 reference
stated in
Europe PubMed Central
PMCID
3725104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23836653%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
PubMed ID
23836653
1 reference
stated in
Europe PubMed Central
PMCID
3725104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23836653%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
ResearchGate publication ID
247772824
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