(Q27860809)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

0 references

1 reference

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Weizhong Li

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Hamish McWilliam

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Toby J. Gibson

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Andreas Wilm

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Rodrigo López

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Desmond G. Higgins

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

author name string

Fabian Sievers

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

David Dineen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Kevin Karplus

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Michael Remmert

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Julie D Thompson

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

publication date

11 October 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

Molecular Systems Biology

14 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

page(s)

539

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

https://www.ncbi.nlm.nih.gov/pubmed/?term=21988835

14 February 2020

issue

1

0 references

1 reference

The Pfam protein families database

9 May 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Fast statistical alignment

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

R-Coffee: a method for multiple alignment of non-coding RNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Clustal W and Clustal X version 2.0

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Kalign--an accurate and fast multiple sequence alignment algorithm

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

ProbCons: Probabilistic consistency-based multiple sequence alignment

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

MUSCLE: multiple sequence alignment with high accuracy and high throughput

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

The Jalview Java alignment editor

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

T-Coffee: A novel method for fast and accurate multiple sequence alignment

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Profile hidden Markov models

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Protein homology detection by HMM-HMM comparison

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

HOMSTRAD: a database of protein structure alignments for homologous families

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Issues in bioinformatics benchmarking: the case study of multiple sequence alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Quality measures for protein alignment benchmarks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

Sequence embedding for fast construction of guide trees for multiple sequence alignment

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

DIALIGN: finding local similarities by multiple sequence alignment.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3261699

PRALINETM: a strategy for improved multiple alignment of transmembrane proteins

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21988835

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21988835

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB.2011.75

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/MSB.2011.75

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21988835%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

2 references