(Q41504368)

1 October 2017

Sequence embedding for fast construction of guide trees for multiple sequence alignment (English)

1 reference

1 October 2017

1 reference

5

1 reference

1 October 2017

Andreas Wilm

4

0 references

author name string

Gordon Blackshields

series ordinal

1

1 reference

1 October 2017

Fabian Sievers

series ordinal

2

1 reference

1 October 2017

Weifeng Shi

series ordinal

3

1 reference

1 October 2017

14 May 2010

1 reference

Algorithms for Molecular Biology

1 October 2017

1 reference

1 October 2017

5

1 reference

1 October 2017

21

1 reference

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Recent developments in the MAFFT multiple sequence alignment program

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Clustal W and Clustal X version 2.0

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Pfam: clans, web tools and services

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

ProbCons: Probabilistic consistency-based multiple sequence alignment

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Rfam: annotating non-coding RNAs in complete genomes

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

MUSCLE: multiple sequence alignment with high accuracy and high throughput

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

T-Coffee: A novel method for fast and accurate multiple sequence alignment

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

HOMSTRAD: a database of protein structure alignments for homologous families

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Pfam: a comprehensive database of protein domain families based on seed alignments

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

A general method applicable to the search for similarities in the amino acid sequence of two proteins

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Multiple sequence alignment by a pairwise algorithm

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

The neighbor-joining method: a new method for reconstructing phylogenetic trees

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Fast embedding methods for clustering tens of thousands of sequences

10 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

Global self-organization of all known protein sequences reveals inherent biological signatures

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2893182

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20470396

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1748-7188-5-21

1 reference

journals/almob/BlackshieldsSSWH10

1 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1748-7188-5-21

1 reference

1 October 2017

PubMed publication ID

20470396

1 reference