(Q34477708)

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Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations

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scholarly article

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Europe PubMed Central

PubMed publication ID

2 August 2017

Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations (English)

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Europe PubMed Central

PubMed publication ID

2 August 2017

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Hendrik-Jan Megens

2

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5 June 2020

1

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5 June 2020

Laurent A. F. Frantz

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24863459%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Martien Groenen

7

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5 June 2020

Richard P. M. A. Crooijmans

6

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Richard P M A Crooijmans

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5 June 2020

author name string

Ole Madsen

3

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5 June 2020

Yogesh Paudel

5

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5 June 2020

publication date

16 June 2014

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Europe PubMed Central

PubMed publication ID

2 August 2017

Molecular Ecology

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5 June 2020

23

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5 June 2020

16

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24863459%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

4089-4102

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24863459%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Admixture facilitates genetic adaptations to high altitude in Tibet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Inferring demographic history from a spectrum of shared haplotype lengths

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

The geography of recent genetic ancestry across Europe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Analyses of pig genomes provide insight into porcine demography and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Length distributions of identity by descent reveal fine-scale demographic history

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Farm-by-farm analysis of microsatellite, mtDNA and SNP genotype data reveals inbreeding and crossbreeding as threats to the survival of a native Spanish pig breed

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Genome-wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

New phenotypes for new breeding goals in pigs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Genomic ancestry of North Africans supports back-to-Africa migrations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

The shaping of modern human immune systems by multiregional admixture with archaic humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Inference of human population history from individual whole-genome sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

genepop'007: a complete re-implementation of the genepop software for Windows and Linux

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

A fast, powerful method for detecting identity by descent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Reconciling the analysis of IBD and IBS in complex trait studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Fast model-based estimation of ancestry in unrelated individuals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Integrating Y-chromosome, mitochondrial, and autosomal data to analyze the origin of pig breeds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Repeated adaptive introgression at a gene under multiallelic balancing selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Ancient DNA, pig domestication, and the spread of the Neolithic into Europe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

PLINK: a tool set for whole-genome association and population-based linkage analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Worldwide phylogeography of wild boar reveals multiple centers of pig domestication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

High MHC diversity maintained by balancing selection in an otherwise genetically monomorphic mammal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Human SNP variability and mutation rate are higher in regions of high recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Inference of population structure using multilocus genotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

The origin of the domestic pig: independent domestication and subsequent introgression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

An experimental study of inbreeding depression in a natural habitat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

6 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

27 October 2018

Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

27 October 2018

A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225523

27 October 2018

A long-term genetic survey of an ungulate population reveals balancing selection acting on MHC through spatial and temporal fluctuations in selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/24863459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial haplotypes of European wild boars with 2n = 36 are closely related to those of European domestic pigs with 2n = 38

1 reference

https://pubmed.ncbi.nlm.nih.gov/24863459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

https://pubmed.ncbi.nlm.nih.gov/24863459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIERARCHICAL ANALYSIS OF INBREEDING DEPRESSION IN PEROMYSCUS POLIONOTUS.

1 reference

https://pubmed.ncbi.nlm.nih.gov/24863459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/MEC.12807

1 reference

Europe PubMed Central

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5 June 2020

PMC publication ID

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24863459%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24863459%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

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