(Q34479676)

2 August 2017

title

Dynamics of domain coverage of the protein sequence universe (English)

1 reference

2 August 2017

Bhanu Rekapalli

1

1 reference

2 August 2017

Kristin Wuichet

series ordinal

2

1 reference

2 August 2017

Gregory D Peterson

series ordinal

3

1 reference

2 August 2017

Igor B Zhulin

series ordinal

4

1 reference

2 August 2017

language of work or name

English

0 references

publication date

16 November 2012

1 reference

2 August 2017

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2 August 2017

volume

13

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2 August 2017

page(s)

634

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The Pfam protein families database

2 August 2017

cites work

1 reference

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Accelerated Profile HMM Searches

6 July 2018

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Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins

6 July 2018

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On the future of genomic data

6 July 2018

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CDD: a Conserved Domain Database for the functional annotation of proteins

6 July 2018

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More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology

6 July 2018

1 reference

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The Pfam protein families database

6 July 2018

1 reference

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Nature of the protein universe

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Comparative functional analysis of the RcsC sensor kinase from different Enterobacteriaceae

6 July 2018

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The National Center for Biotechnology Information's Protein Clusters Database

6 July 2018

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Next-generation DNA sequencing

6 July 2018

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Pfam 10 years on: 10,000 families and still growing

6 July 2018

1 reference

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The Pfam protein families database

6 July 2018

1 reference

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Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

6 July 2018

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Identification of putative domain linkers by a neural network - application to a large sequence database

6 July 2018

1 reference

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The ProDom database of protein domain families: more emphasis on 3D

6 July 2018

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ADDA: a domain database with global coverage of the protein universe

6 July 2018

1 reference

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The COG database: an updated version includes eukaryotes

6 July 2018

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Evolution of the protein repertoire

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

An analysis of protein domain linkers: their classification and role in protein folding

6 July 2018

1 reference

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The structure of the protein universe and genome evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Domain size distributions can predict domain boundaries

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Protein function in the post-genomic era.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Profile hidden Markov models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

SMART, a simple modular architecture research tool: identification of signaling domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Domain assignment for protein structures using a consensus approach: characterization and analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Predicting coiled-coil regions in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Identification and analysis of domains in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

Nucleation, rapid folding, and globular intrachain regions in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

One thousand families for the molecular biologist

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3557196

GLUE-IT and PEDEL-AA: new programmes for analyzing protein diversity in randomized libraries

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-634

Paircoil2: improved prediction of coiled coils from sequence.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-634

21 January 2018

Identifiers

DOI

10.1186/1471-2164-13-634

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference