(Q34479763)

2 August 2017

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title

Pathways of Genetic Code Evolution in Ancient and Modern Organisms (English)

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2 August 2017

Supratim Sengupta

1

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2 August 2017

Paul G Higgs

series ordinal

2

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2 August 2017

language of work or name

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9 June 2015

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Journal of Molecular Evolution

2 August 2017

published in

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2 August 2017

volume

80

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2 August 2017

issue

5-6

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2 August 2017

page(s)

229-243

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https://scigraph.springernature.com/pub.10.1007/s00239-015-9686-8

2 August 2017

exact match

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cites work

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Revisiting the physico-chemical hypothesis of code origin: an analysis based on code-sequence coevolution in a finite population

21 January 2018

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Adaptive antioxidant methionine accumulation in respiratory chain complexes explains the use of a deviant genetic code in mitochondria

21 January 2018

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The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a)

21 January 2018

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DNA before proteins? Recent discoveries in nucleic acid catalysis strengthen the case

21 January 2018

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The coevolutionary roots of biochemistry and cellular organization challenge the RNA world paradigm

21 January 2018

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Expanded use of sense codons is regulated by modified cytidines in tRNA

21 January 2018

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What RNA World? Why a Peptide/RNA Partnership Merits Renewed Experimental Attention

21 January 2018

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Codon reassignment and amino acid composition in hemichordate mitochondria

21 January 2018

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The origin of the biologically coded amino acids

21 January 2018

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Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.

21 January 2018

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A new understanding of the decoding principle on the ribosome

21 January 2018

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Genetic code origin: are the pathways of type Glu-tRNA(Gln) --> Gln-tRNA(Gln) molecular fossils or not?

21 January 2018

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An extension of the coevolution theory of the origin of the genetic code

21 January 2018

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Physicochemical optimization in the genetic code origin as the number of codified amino acids increases.

21 January 2018

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A blind empiricism against the coevolution theory of the origin of the genetic code.

21 January 2018

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Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.

21 January 2018

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The Hypothesis that the Genetic Code Originated in Coupled Synthesis of Proteins and the Evolutionary Predecessors of Nucleic Acids in Primitive Cells

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The genetic code is one in a million

21 January 2018

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The case for an error minimizing standard genetic code

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Optimality of the genetic code with respect to protein stability and amino-acid frequencies

21 January 2018

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Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

21 January 2018

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A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity.

21 January 2018

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Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes

21 January 2018

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Compensatory neutral mutations and the evolution of RNA.

21 January 2018

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A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code

21 January 2018

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The RNA World: molecular cooperation at the origins of life

21 January 2018

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A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code

21 January 2018

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Aminoacyl-tRNA synthesis: divergent routes to a common goal

21 January 2018

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The adaptor hypothesis revisited

21 January 2018

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The antiquity of RNA-based evolution

21 January 2018

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Arginine as an evolutionary intruder into protein synthesis

21 January 2018

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Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation

21 January 2018

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Guilt by association: the arginine case revisited

21 January 2018

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Rewiring the keyboard: evolvability of the genetic code

21 January 2018

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Genomically recoded organisms expand biological functions

21 January 2018

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The evolutionary transition from RNA to DNA in early cells.

21 January 2018

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Genetic code development by stop codon takeover

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The molecular basis of nuclear genetic code change in ciliates.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

On the evolution of the standard amino-acid alphabet

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Mutation pressure and the evolution of organelle genomic architecture

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp

21 January 2018

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Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont

21 January 2018

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Origin of organic compounds on the primitive earth and in meteorites

21 January 2018

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Exceptional error minimization in putative primordial genetic codes

21 January 2018

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Codon reassignment (codon capture) in evolution.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The influence of anticodon-codon interactions and modified bases on codon usage bias in bacteria.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Testing a biosynthetic theory of the genetic code: fact or artifact?

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Recoded organisms engineered to depend on synthetic amino acids.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Driving change: the evolution of alternative genetic codes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Transfer RNA mutation and the malleability of the genetic code.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The impact of message mutation on the fitness of a genetic code

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

A unified model of codon reassignment in alternative genetic codes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The mechanisms of codon reassignments in mitochondrial genetic codes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Two perspectives on the origin of the standard genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

From one amino acid to another: tRNA-dependent amino acid biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The 'polysemous' codon--a codon with multiple amino acid assignment caused by dual specificity of tRNA identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Mitochondrial genetic codes evolve to match amino acid requirements of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The presence of pseudouridine in the anticodon alters the genetic code: a possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The triplet code from first principles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Genetic code supports targeted insertion of two amino acids by one codon

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Collective evolution and the genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Reasons for the occurrence of the twenty coded protein amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

A co-evolution theory of the genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Coevolution theory of the genetic code at age thirty

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Emergence of life: from functional RNA selection to natural selection and beyond

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

RNA-ligand chemistry: a testable source for the genetic code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Quality control by the ribosome following peptide bond formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Fidelity at the molecular level: lessons from protein synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

Domain-specific recruitment of amide amino acids for protein synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-015-9686-8

On the optimality of the genetic code, with the consideration of termination codons

21 January 2018

1 reference

12 December 2020

Did evolution select a nonrandom "alphabet" of amino acids?

1 reference

12 December 2020

Unassigned codons, nonsense suppression, and anticodon modifications in the evolution of the genetic code

1 reference

12 December 2020

Evolution of the mitochondrial genetic code. III. Reassignment of CUN codons from leucine to threonine during evolution of yeast mitochondria

1 reference

12 December 2020

Codon usage in mitochondrial genomes: distinguishing context-dependent mutation from translational selection

1 reference

12 December 2020

A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli.

1 reference

12 December 2020

On the optimality of the genetic code, with the consideration of coevolution theory by comparison of prominent cost measure matrices

1 reference

12 December 2020

On malleability in the genetic code

1 reference

12 December 2020

On the evolution of redundancy in genetic codes

1 reference

12 December 2020

10.1007/S00239-015-9686-8

Identifiers

DOI

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Dimensions Publication ID

2 August 2017

1008240066

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1 reference