(Q34495048)

2 August 2017

title

Coordinated genome-wide modifications within proximal promoter cis-regulatory elements during vertebrate evolution (English)

1 reference

2 August 2017

main subject

cis-regulatory element

1 reference

3

Gregory A Wray

1 reference

2 August 2017

Ken Daigoro Yokoyama

1

1 reference

2 August 2017

Jeffrey L Thorne

series ordinal

2

1 reference

2 August 2017

publication date

30 November 2010

1 reference

Genome Biology and Evolution

2 August 2017

published in

1 reference

2 August 2017

volume

3

1 reference

2 August 2017

page(s)

66-74

1 reference

Evolution of transcription networks--lessons from yeasts

2 August 2017

cites work

1 reference

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6 July 2018

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6 July 2018

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The origin of conserved protein domains and amino acid repeats via adaptive competition for control over amino acid residues

6 July 2018

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Promoter architecture and the evolvability of gene expression

6 July 2018

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Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships

6 July 2018

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6 July 2018

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Conservation of core gene expression in vertebrate tissues

6 July 2018

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6 July 2018

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Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

6 July 2018

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The RNA polymerase II core promoter - the gateway to transcription.

6 July 2018

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The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

6 July 2018

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6 July 2018

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6 July 2018

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Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1

6 July 2018

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6 July 2018

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Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

6 July 2018

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STAMP: a web tool for exploring DNA-binding motif similarities

6 July 2018

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Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation

6 July 2018

1 reference

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The evolutionary significance of cis-regulatory mutations

6 July 2018

1 reference

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Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

6 July 2018

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6 July 2018

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Evolutionary turnover of mammalian transcription start sites

6 July 2018

1 reference

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A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors

6 July 2018

1 reference

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

6 July 2018

1 reference

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Adaptive evolution of transcription factor binding sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3021792

Clustering of DNA sequences in human promoters

6 July 2018

1 reference

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6 July 2018

1 reference

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The evolution of transcriptional regulation in eukaryotes

6 July 2018

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

6 July 2018

1 reference

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6 July 2018

1 reference

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Initial sequencing and comparative analysis of the mouse genome

6 July 2018

1 reference

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Initial sequencing and analysis of the human genome

6 July 2018

1 reference

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RefSeq and LocusLink: NCBI gene-centered resources

6 July 2018

1 reference

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NCBI's LocusLink and RefSeq

6 July 2018

1 reference

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Structure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity

6 July 2018

1 reference

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TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter.

6 July 2018

1 reference

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Structural analysis of the DNA target site and its interaction with Mbp1.

6 July 2018

1 reference

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A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3021792

Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3021792

Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3021792

27 October 2018

Identifiers

DOI

10.1093/GBE/EVQ078

1 reference

2 August 2017

1 reference

2 August 2017

1 reference