(Q34499447)

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Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I.

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scholarly article

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Europe PubMed Central

PubMed publication ID

2 August 2017

Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I. (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

computational biology

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based on heuristic

inferred from title

Escherichia coli

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author name string

Daniel Strahs

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Chang-Xi Zhu

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Bokun Cheng

3

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Jason Chen

4

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Yuk-Ching Tse-Dinh

5

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Europe PubMed Central

PubMed publication ID

2 August 2017

language of work or name

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publication date

31 March 2006

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Europe PubMed Central

PubMed publication ID

2 August 2017

number of pages

13

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Nucleic Acids Research

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Europe PubMed Central

PubMed publication ID

2 August 2017

34

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Europe PubMed Central

PubMed publication ID

2 August 2017

6

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Europe PubMed Central

PubMed publication ID

2 August 2017

1785-1797

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Scalable molecular dynamics with NAMD

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Structure of a Complex between E. coli DNA Topoisomerase I and Single-Stranded DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Biochemical characterization of an invariant histidine involved in Escherichia coli DNA topoisomerase I catalysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Electrostatics of nanosystems: application to microtubules and the ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Probing the mechanism of enzymatic phosphoryl transfer with a chemical trick

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Crystal structure of a complex of a type IA DNA topoisomerase with a single-stranded DNA molecule

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

DNA topoisomerases: structure, function, and mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Protein-nucleotide interactions in E. coli DNA topoisomerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Conformational changes in E. coli DNA topoisomerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Similarity in the catalysis of DNA breakage and rejoining by type IA and IIA DNA topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Structural similarities between topoisomerases that cleave one or both DNA strands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Site-directed mutagenesis of conserved aspartates, glutamates and arginines in the active site region of Escherichia coli DNA topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Identification of active site residues in Escherichia coli DNA topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Reduced surface: an efficient way to compute molecular surfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

VMD: visual molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

The twisted 'life' of DNA in the cell: bacterial topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Complete nucleotide sequence of the topA gene encoding Escherichia coli DNA topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Molecular cloning and DNA sequence analysis of Escherichia coli topB, the gene encoding topoisomerase III.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Control of bacterial DNA supercoiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421505

7 July 2018

Bacterial and archeal type I topoisomerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mechanism of action of T7 DNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The acidic triad conserved in type IA DNA topoisomerases is required for binding of Mg(II) and subsequent conformational change

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the molecular basis of the thermal sensitivity of an Escherichia coli topA mutant

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing the structural domains and function in vivo of Escherichia coli DNA topoisomerase I by mutagenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a potent decatenating enzyme from Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Peptide sequencing and site-directed mutagenesis identify tyrosine-319 as the active site tyrosine of Escherichia coli DNA topoisomerase I

1 reference

https://pubmed.ncbi.nlm.nih.gov/16582104

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKL109

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

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