(Q34502547)

2 August 2017

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title

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework (English)

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2 August 2017

main subject

distributed computing

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author

Henning Hermjakob

4

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2 August 2017

John Boyle

8

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Sarah A Killcoyne

object named as

Sarah Killcoyne

3

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Eric W Deutsch

7

object named as

Eric W Deutsch

1 reference

2 August 2017

Steven Lewis

1

1 reference

2 August 2017

Attila Csordas

2

1 reference

2 August 2017

Michael R Hoopmann

5

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2 August 2017

Robert L Moritz

6

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2 August 2017

publication date

5 December 2012

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2 August 2017

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2 August 2017

volume

13

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2 August 2017

page(s)

324

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Creative Commons Attribution 2.0 Generic

2 August 2017

copyright license

start time

1 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

PRIDE Inspector: a tool to visualize and validate MS proteomics data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web Services

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

Fast parallel tandem mass spectral library searching using GPU hardware acceleration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

Large improvements in MS/MS-based peptide identification rates using a hybrid analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

CloudBurst: highly sensitive read mapping with MapReduce

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

Open mass spectrometry search algorithm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

TANDEM: matching proteins with tandem mass spectra

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3538679

Parallel tandem: a program for parallel processing of tandem mass spectra using PVM or MPI and X!Tandem

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-324

21 January 2018

Identifiers

DOI

10.1186/1471-2105-13-324

1 reference

journals/bmcbi/LewisCKHHMDB12

2 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference