(Q34520381)

2 August 2017

title

Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes (English)

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2 August 2017

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8

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2 August 2017

10

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2 August 2017

Elizabeth M Batty

2

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Suet-feung Chin

object named as

Suet-Feung Chin

9

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Carlos Caldas

11

object named as

Carlos Caldas

1 reference

2 August 2017

6

Susanna L Cooke

1 reference

2 August 2017

3

Jessica C M Pole

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2 August 2017

Ina Schulte

1

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2 August 2017

Katherine A Blood

4

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2 August 2017

Steven Mo

5

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2 August 2017

Charlotte Ng

7

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2 August 2017

Karen D Howarth

12

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2 August 2017

Paul A W Edwards

13

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2 August 2017

language of work or name

English

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publication date

22 December 2012

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2 August 2017

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2 August 2017

volume

13

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2 August 2017

page(s)

719

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Sequence analysis of mutations and translocations across breast cancer subtypes

2 August 2017

cites work

1 reference

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Whole-genome analysis informs breast cancer response to aromatase inhibition

7 July 2018

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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

7 July 2018

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Are breast cancers driven by fusion genes?

7 July 2018

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Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer

7 July 2018

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Estimation of rearrangement phylogeny for cancer genomes

7 July 2018

1 reference

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Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

7 July 2018

1 reference

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deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

7 July 2018

1 reference

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Single-molecule analysis of genome rearrangements in cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Genomic architecture characterizes tumor progression paths and fate in breast cancer patients

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Mutation spectrum revealed by breakpoint sequencing of human germline CNVs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Signatures of mutation and selection in the cancer genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Fast and accurate long-read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Complex landscapes of somatic rearrangement in human breast cancer genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Fusion genes and chromosome translocations in the common epithelial cancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

The NRG1 gene is frequently silenced by methylation in breast cancers and is a strong candidate for the 8p tumour suppressor gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Improved protocols for the illumina genome analyzer sequencing system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

A microhomology-mediated break-induced replication model for the origin of human copy number variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Array painting reveals a high frequency of balanced translocations in breast cancer cell lines that break in cancer-relevant genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Paired-end mapping reveals extensive structural variation in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

The impact of translocations and gene fusions on cancer causation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Co-amplification of 8p12 and 11q13 in breast cancers is not the result of a single genomic event.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Novel patterns of genome rearrangement and their association with survival in breast cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

High-resolution analysis of chromosome rearrangements on 8p in breast, colon and pancreatic cancer reveals a complex pattern of loss, gain and translocation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Breast tumor copy number aberration phenotypes and genomic instability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Array painting: a method for the rapid analysis of aberrant chromosomes using DNA microarrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

End-sequence profiling: sequence-based analysis of aberrant genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

BLAT—The BLAST-Like Alignment Tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Molecular cytogenetic analysis of breast cancer cell lines

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Analysis of proviral integration in human mammary epithelial cell lines immortalized by retroviral infection with a temperature-sensitive SV40 T-antigen construct

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Establishment and characterization of three new continuous cell lines derived from human breast carcinomas

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

A new diploid nontumorigenic human breast epithelial cell line isolated and propagated in chemically defined medium.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-719

Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Comprehensive assessment of TMPRSS2 and ETS family gene aberrations in clinically localized prostate cancer

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548764

Identification of cryptic sites of DNA sequence amplification in human breast cancer by chromosome microdissection

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23260012

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-13-719

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/razyjojwonbudeybg4y4ox2fpm

30 July 2022

release_razyjojwonbudeybg4y4ox2fpm

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/razyjojwonbudeybg4y4ox2fpm

30 July 2022

https://api.fatcat.wiki/v0/release/razyjojwonbudeybg4y4ox2fpm

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/razyjojwonbudeybg4y4ox2fpm

1 reference

30 July 2022