(Q34520774)

English

Use of bifidobacterial specific terminal restriction fragment length polymorphisms to complement next generation sequence profiling of infant gut communities.

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23261904%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Use of bifidobacterial specific terminal restriction fragment length polymorphisms to complement next generation sequence profiling of infant gut communities (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23261904%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Santiago Ruiz-Moyano

4

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23261904%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

author name string

Zachery T Lewis

1

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21 February 2020

Nicholas A Bokulich

2

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21 February 2020

Karen M Kalanetra

3

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Europe PubMed Central

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21 February 2020

Mark A Underwood

5

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21 February 2020

David A Mills

6

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21 February 2020

publication date

20 December 2012

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21 February 2020

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23261904%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

19

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Europe PubMed Central

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21 February 2020

62-69

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23261904%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

Human gut microbiome viewed across age and geography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Diversity of bifidobacteria within the infant gut microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Next-generation sequencing reveals significant bacterial diversity of botrytized wine

1 reference

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Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale

1 reference

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7 July 2018

Distinct gut microbiota in southeastern African and northern European infants.

1 reference

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7 July 2018

Barcoded pyrosequencing reveals that consumption of galactooligosaccharides results in a highly specific bifidogenic response in humans

1 reference

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7 July 2018

Evaluation of stool microbiota signatures in two cohorts of Asian (Singapore and Indonesia) newborns at risk of atopy

1 reference

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7 July 2018

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Bifidobacterial utilization of human milk oligosaccharides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Genomics and ecological overview of the genus Bifidobacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects

1 reference

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7 July 2018

Search and clustering orders of magnitude faster than BLAST

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Comparative genomics of the genus Bifidobacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

1 reference

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7 July 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

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7 July 2018

PyNAST: a flexible tool for aligning sequences to a template alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Exploring the diversity of the bifidobacterial population in the human intestinal tract

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Quantitative real-time PCR is not more sensitive than "conventional" PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Clustal W and Clustal X version 2.0

1 reference

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7 July 2018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Optimization of terminal restriction fragment polymorphism (TRFLP) analysis of human gut microbiota.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Quantitative PCR with 16S rRNA-gene-targeted species-specific primers for analysis of human intestinal bifidobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

7 July 2018

Reducing chimera formation during PCR amplification to ensure accurate genotyping.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

27 October 2018

MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

27 October 2018

Culture-independent microbial community analysis with terminal restriction fragment length polymorphism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

27 October 2018

Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

27 October 2018

Culture-independent analysis of fecal microbiota in infants, with special reference to Bifidobacterium species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

27 October 2018

Establishment and development of intestinal microbiota in preterm neonates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

9 December 2018

Analysis of infant isolates of Bifidobacterium breve by comparative genome hybridization indicates the existence of new subspecies with marked infant specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

9 December 2018

Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4764513

9 December 2018

Analysis of the Fecal Microbiota of Irritable Bowel Syndrome Patients and Healthy Controls with Real-Time PCR

1 reference

https://pubmed.ncbi.nlm.nih.gov/23261904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities

1 reference

https://pubmed.ncbi.nlm.nih.gov/23261904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Promoting bifidobacteria in the human infant intestine: why, how, and which one?

1 reference

https://pubmed.ncbi.nlm.nih.gov/23261904

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.ANAEROBE.2012.12.005

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23261904%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

release_7xjd4pr5xreuppebwkbtn7gntm

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24 November 2022

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PMC publication ID

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21 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

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21 February 2020

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