(Q39743064)

English

Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts

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scholarly article

1 reference

Europe PubMed Central

14 September 2017

Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts (English)

1 reference

Europe PubMed Central

14 September 2017

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Michael W. Friedrich

object named as

Michael W Friedrich

2

1 reference

ORCID Public Data File 2021

author name string

Tillmann Lueders

1

1 reference

Europe PubMed Central

14 September 2017

language of work or name

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publication date

1 January 2003

1 reference

Europe PubMed Central

14 September 2017

Applied and Environmental Microbiology

1 reference

Europe PubMed Central

14 September 2017

69

1 reference

Europe PubMed Central

14 September 2017

320-326

1 reference

Europe PubMed Central

14 September 2017

1

1 reference

Europe PubMed Central

14 September 2017

Analysis of mer Gene Subclasses within Bacterial Communities in Soils and Sediments Resolved by Fluorescent-PCR-Restriction Fragment Length Polymorphism Profiling.

1 reference

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Interpreting 16S rDNA T-RFLP Data: Application of Self-Organizing Maps and Principal Component Analysis to Describe Community Dynamics and Convergence

1 reference

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Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil

1 reference

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14 September 2017

Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics

1 reference

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Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling

1 reference

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Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes

1 reference

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Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes

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Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities

1 reference

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Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays

1 reference

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Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis

1 reference

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Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis

1 reference

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Archaeal population dynamics during sequential reduction processes in rice field soil

1 reference

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Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis

1 reference

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Culture-independent characterization of a gene responsible for nitrogen fixation in the symbiotic microbial community in the gut of the termite Neotermes koshunensis

1 reference

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Phylogenetic diversity of nitrogen fixation genes in the symbiotic microbial community in the gut of diverse termites.

1 reference

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Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis

1 reference

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Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil.

1 reference

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Molecular analyses of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase

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Quantitative measure of small-subunit rRNA gene sequences of the kingdom korarchaeota

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Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity

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Bias in template-to-product ratios in multitemplate PCR

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Association of marine archaea with the digestive tracts of two marine fish species.

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Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval.

1 reference

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14 September 2017

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

1 reference

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Real time quantitative PCR

1 reference

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

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DNA rehybridization during PCR: the 'Cot effect' and its consequences

1 reference

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Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152431

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Partial gene sequences for the A subunit of methyl-coenzyme M reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae

1 reference

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A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences.

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Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

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Methanogenesis: genes, genomes, and who's on first?

1 reference

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Isolating PCR-quality DNA from human feces with a soil DNA kit.

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Identification of major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products

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Differential amplification of rRNA genes by polymerase chain reaction

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Molecular analyses of methyl-coenzyme M reductase alpha-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage.

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1 reference

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1 reference

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Identifiers

10.1128/AEM.69.1.320-326.2003

1 reference

Europe PubMed Central

14 September 2017

1 reference

Europe PubMed Central

14 September 2017

1 reference

Europe PubMed Central

14 September 2017

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