(Q34530682)

2 August 2017

title

Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum (English)

1 reference

2 August 2017

main subject

Plasmodium falciparum

0 references

malaria

0 references

author name string

Hong Cai

1

1 reference

2 August 2017

Changjin Hong

2

1 reference

2 August 2017

Jianying Gu

3

1 reference

2 August 2017

Timothy G Lilburn

4

1 reference

2 August 2017

Rui Kuang

5

1 reference

2 August 2017

Yufeng Wang

6

1 reference

2 August 2017

publication date

17 December 2012

1 reference

2 August 2017

1 reference

2 August 2017

volume

6 Suppl 3

1 reference

2 August 2017

page(s)

S5

1 reference

describes a project that uses

2 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum.

7 July 2018

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Transcription factor AP2-Sp and its target genes in malarial sporozoites.

7 July 2018

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Functional consequences of perturbing polyamine metabolism in the malaria parasite, Plasmodium falciparum.

7 July 2018

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Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

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7 July 2018

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7 July 2018

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A newly discovered protein export machine in malaria parasites

7 July 2018

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Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Global alignment of protein-protein interaction networks by graph matching methods

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Glycerol: an unexpected major metabolite of energy metabolism by the human malaria parasite.

7 July 2018

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7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

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7 July 2018

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A new graph-based method for pairwise global network alignment

7 July 2018

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Characterisation of Plasmodium invasive organelles; an ookinete microneme proteome

7 July 2018

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Large-scale differential proteome analysis in Plasmodium falciparum under drug treatment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Genetic and computational identification of a conserved bacterial metabolic module

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

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7 July 2018

1 reference

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7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

PlasmoDB: a functional genomic database for malaria parasites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

InterPro: the integrative protein signature database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

The genome of the simian and human malaria parasite Plasmodium knowlesi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Proteomic analysis of zygote and ookinete stages of the avian malaria parasite Plasmodium gallinaceum delineates the homologous proteomes of the lethal human malaria parasite Plasmodium falciparum

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Multiplex PCR and oligonucleotide microarray for detection of single-nucleotide polymorphisms associated with Plasmodium falciparum drug resistance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

In silico discovery of transcription regulatory elements in Plasmodium falciparum.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

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7 July 2018

1 reference

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PfGCN5-mediated histone H3 acetylation plays a key role in gene expression in Plasmodium falciparum

7 July 2018

1 reference

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SELDI-TOF-MS analysis of chloroquine resistant and sensitive Plasmodium falciparum strains

7 July 2018

1 reference

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Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale

7 July 2018

1 reference

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Invasion of red blood cells by malaria parasites

7 July 2018

1 reference

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Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Maurer's clefts: a novel multi-functional organelle in the cytoplasm of Plasmodium falciparum-infected erythrocytes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

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7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

The Plasmodium protein network diverges from those of other eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

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7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Fractionation and identification of proteins by 2-DE and MS: towards a proteomic analysis of Plasmodium falciparum

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Profile-based string kernels for remote homology detection and motif extraction

7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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Conserved patterns of protein interaction in multiple species

7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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In vivo transcriptional profiling of Plasmodium falciparum

7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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7 July 2018

1 reference

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A Plasmodium gene family encoding Maurer's cleft membrane proteins: structural properties and expression profiling

7 July 2018

1 reference

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7 July 2018

1 reference

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Mass spectrometric analysis of Plasmodium falciparum erythrocyte membrane protein-1 variants expressed by placental malaria parasites

7 July 2018

1 reference

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7 July 2018

1 reference

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The COG database: an updated version includes eukaryotes

7 July 2018

1 reference

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The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

7 July 2018

1 reference

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Discovery of gene function by expression profiling of the malaria parasite life cycle

7 July 2018

1 reference

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Identification of Plasmodium falciparum antigens by antigenic analysis of genomic and proteomic data

7 July 2018

1 reference

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The Plasmodium vivax genome sequencing project

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

7 July 2018

1 reference

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A proteomic view of the Plasmodium falciparum life cycle

7 July 2018

1 reference

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Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

7 July 2018

1 reference

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Genome sequence of the human malaria parasite Plasmodium falciparum

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

T-Coffee: A novel method for fast and accurate multiple sequence alignment

7 July 2018

1 reference

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RAP1 controls rhoptry targeting of RAP2 in the malaria parasite Plasmodium falciparum

7 July 2018

1 reference

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Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria

7 July 2018

1 reference

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The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins

7 July 2018

1 reference

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Multiple sequence alignment with Clustal X

7 July 2018

1 reference

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The AP2/EREBP family of plant transcription factors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Immunoproteomics profiling of blood stage Plasmodium vivax infection by high-throughput screening assays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

TORQUE: topology-free querying of protein interaction networks

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Selection of yeast strains with enhanced expression of Plasmodium falciparum proteins

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Global alignment of multiple protein interaction networks.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Computing topological parameters of biological networks.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Alignment of molecular networks by integer quadratic programming

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Detecting conserved interaction patterns in biological networks.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Progress in in silico functional genomics: the malaria Metabolic Pathways database

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Pairwise alignment of protein interaction networks.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Systematic identification of functional orthologs based on protein network comparison

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Proteome analysis of rhoptry-enriched fractions isolated from Plasmodium merozoites

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Disruption of Plasmodium berghei merozoite surface protein 7 gene modulates parasite growth in vivo

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Quantitative proteomics of the human malaria parasite Plasmodium falciparum and its application to studies of development and inhibition

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Identification of regulatory elements in the Plasmodium falciparum genome

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Malaria-parasitized erythrocytes and hemozoin nonenzymatically generate large amounts of hydroxy fatty acids that inhibit monocyte functions

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3524314

Plasmodium falciparum metabolic pathways (MPMP) project upgraded with a database of subcellular locations of gene products

27 October 2018

1 reference

12 December 2020

Monitoring the chromosome 2 intraerythrocytic transcriptome of Plasmodium falciparum using oligonucleotide arrays

1 reference

12 December 2020

Interaction between Not1p, a component of the Ccr4-not complex, a global regulator of transcription, and Dhh1p, a putative RNA helicase

1 reference

12 December 2020

Physical and functional interactions of Arabidopsis ADA2 transcriptional coactivator proteins with the acetyltransferase GCN5 and with the cold-induced transcription factor CBF1

1 reference

12 December 2020

Graph kernels for disease outcome prediction from protein-protein interaction networks

1 reference

12 December 2020

10.1186/1752-0509-6-S3-S5

Identifiers

DOI

1 reference

journals/bmcsb/CaiHGLKW12

2 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

2 August 2017

1 reference