(Q34539662)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

Chapter 5: Network biology approach to complex diseases (English)

1 reference

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21 February 2020

3

1 reference

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21 February 2020

Dong-Yeon Cho

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

author name string

Yoo-Ah Kim

series ordinal

2

1 reference

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21 February 2020

publication date

27 December 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

21 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

page(s)

e1002820

1 reference

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Creative Commons CC0 License

21 February 2020

copyright license

start time

27 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

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Rare De Novo and Transmitted Copy-Number Variation in Autistic Spectrum Disorders

7 July 2018

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De novo discovery of mutated driver pathways in cancer

7 July 2018

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Modeling information flow in biological networks

7 July 2018

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7 July 2018

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Subnetwork state functions define dysregulated subnetworks in cancer

7 July 2018

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Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology

7 July 2018

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Finding undetected protein associations in cell signaling by belief propagation

7 July 2018

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DEGAS: de novo discovery of dysregulated pathways in human diseases

7 July 2018

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Inferring cancer subnetwork markers using density-constrained biclustering

7 July 2018

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A max-flow-based approach to the identification of protein complexes using protein interaction and microarray data

7 July 2018

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Protein-protein interactions essentials: key concepts to building and analyzing interactome networks

7 July 2018

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Functional impact of global rare copy number variation in autism spectrum disorders

7 July 2018

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An introduction to effective use of enrichment analysis software

7 July 2018

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SPICi: a fast clustering algorithm for large biological networks

7 July 2018

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Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets

7 July 2018

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Associating genes and protein complexes with disease via network propagation

7 July 2018

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The Gene Ontology in 2010: extensions and refinements

7 July 2018

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Partial Correlation Estimation by Joint Sparse Regression Models

7 July 2018

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Coexpression network based on natural variation in human gene expression reveals gene interactions and functions

7 July 2018

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Analysis of AML genes in dysregulated molecular networks

7 July 2018

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Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function

7 July 2018

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Molecular networks as sensors and drivers of common human diseases

7 July 2018

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Information flow analysis of interactome networks

7 July 2018

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Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

7 July 2018

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Shortest-path network analysis is a useful approach toward identifying genetic determinants of longevity

7 July 2018

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Topological properties of protein interaction networks from a structural perspective

7 July 2018

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Inferring pathway activity toward precise disease classification

7 July 2018

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A genomewide functional network for the laboratory mouse

7 July 2018

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Regulatory networks define phenotypic classes of human stem cell lines

7 July 2018

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High-quality binary protein interaction map of the yeast interactome network

7 July 2018

1 reference

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Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Protein complex identification by supervised graph local clustering

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

A map of human protein interactions derived from co-expression of human mRNAs and their orthologs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Walking the interactome for prioritization of candidate disease genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

eQED: an efficient method for interpreting eQTL associations using protein networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Consistent dissection of the protein interaction network by combining global and local metrics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

A modular network model of aging

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Information flow in interaction networks.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Growing functional modules from a seed protein via integration of protein interaction and gene expression data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Network-based classification of breast cancer metastasis

7 July 2018

1 reference

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Population genomics of human gene expression

7 July 2018

1 reference

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Bayesian methods for proteomics

7 July 2018

1 reference

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Methods for the detection and analysis of protein-protein interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Modular organization of protein interaction networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Global topological features of cancer proteins in the human interactome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Modularity and community structure in networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Development and implementation of an algorithm for detection of protein complexes in large interaction networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Genome-wide associations of gene expression variation in humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Scale-free networks in cell biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Bayesian network analysis of signaling networks: a primer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

The use of edge-betweenness clustering to investigate biological function in protein interaction networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Autism as a paradigmatic complex genetic disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Iterative cluster analysis of protein interaction data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Predicting protein complex membership using probabilistic network reliability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Greedily building protein networks with confidence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Protein complexes and functional modules in molecular networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Modular organization of cellular networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

An automated method for finding molecular complexes in large protein interaction networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Discovering regulatory and signalling circuits in molecular interaction networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Lethality and centrality in protein networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Gene ontology: tool for the unification of biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

From molecular to modular cell biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Cluster analysis and display of genome-wide expression patterns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

Protein complex prediction via cost-based clustering

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Revealing biological modules via graph summarization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Detection of functional modules from protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Detecting functional modules in the yeast protein-protein interaction network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Algorithms for detecting significantly mutated pathways in cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Prediction of phenotype and gene expression for combinations of mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

An integrative approach for causal gene identification and gene regulatory pathway inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1002820

Identification of coordinately dysregulated subnetworks in complex phenotypes.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

How perfect can protein interactomes be?

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531284

A probabilistic functional network of yeast genes

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23300411

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

CFinder: locating cliques and overlapping modules in biological networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23300411

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1002820

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

DBLP publication ID

journals/ploscb/ChoKP12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23300411%20AND%20SRC:MED&resulttype=core&format=json