(Q34549704)

3 August 2017

1 reference

title

JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison (English)

1 reference

3 August 2017

Phillip Seitzer

1

1 reference

3 August 2017

Tu Anh Huynh

series ordinal

2

1 reference

3 August 2017

Marc T Facciotti

series ordinal

3

1 reference

3 August 2017

publication date

16 January 2013

1 reference

3 August 2017

1 reference

3 August 2017

volume

14

1 reference

3 August 2017

page(s)

18

1 reference

Evidence for horizontal gene transfer of anaerobic carbon monoxide dehydrogenases

3 August 2017

cites work

1 reference

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MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

7 July 2018

1 reference

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i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Integration and visualization of systems biology data in context of the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

PLAZA: a comparative genomics resource to study gene and genome evolution in plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

MicrobesOnline: an integrated portal for comparative and functional genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

JBrowse: a next-generation genome browser

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Purine utilization by Klebsiella oxytoca M5al: genes for ring-oxidizing and -opening enzymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

EcoCyc: a comprehensive view of Escherichia coli biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

STRING 8--a global view on proteins and their functional interactions in 630 organisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The quest for orthologs: finding the corresponding gene across genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

BioJava: an open-source framework for bioinformatics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Evolution of rhodopsin ion pumps in haloarchaea.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The life-cycle of operons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The many faces of glutathione in bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The integrated microbial genomes (IMG) system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Operon formation is driven by co-regulation and not by horizontal gene transfer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The UCSC Genome Browser Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Genome trees and the tree of life

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Connected gene neighborhoods in prokaryotic genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

An efficient algorithm for large-scale detection of protein families

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Gene context conservation of a higher order than operons.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

The use of gene clusters to infer functional coupling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

Horizontal gene transfer in the molecular evolution of mannose PTS transporters.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-18

Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-18

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-18

Synteny and Collinearity in Plant Genomes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3560190

27 October 2018

Identifiers

DOI

10.1186/1471-2105-14-18

1 reference

journals/bmcbi/SeitzerHF13

3 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

3 August 2017

1 reference