(Q34561394)

3 August 2017

Ab initio conformational analysis of nucleic acid components: intrinsic energetic contributions to nucleic acid structure and dynamics (English)

1 reference

3 August 2017

2

Nilsson L

1 reference

3 August 2017

Foloppe N

1

1 reference

PubMed ID

11891629

3 August 2017

MacKerell AD Jr

series ordinal

3

1 reference

3 August 2017

1 January 2001

1 reference

3 August 2017

1 reference

3 August 2017

61

1 reference

3 August 2017

1

1 reference

3 August 2017

61-76

1 reference

Conformational studies of nucleic acids. II. The conformational energetics of commonly occurring nucleosides

3 August 2017

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Ground-State Properties of Nucleic Acid Constituents Studied by Density Functional Calculations. 3. Role of Sugar Puckering and Base Orientation on the Energetics and Geometry of 2‘-Deoxyribonucleosides and Ribonucleosides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Intramolecular hydrogen bonding in 2′-deoxyribonucleosides: an AIM topological study of the electronic density

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

The peculiar role of cytosine in nucleoside conformational behaviour: Hydrogen bond donor capacity of nucleic bases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

New insights into the structure of abasic DNA from molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Model conformational study of nucleic acid phosphate ester bonds. Torsional potential of dimethyl phosphate monoanion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Conformations of the sugar-phosphate backbone in helical DNA crystal structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Crystal structure of a DNA Holliday junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Abasic sites in duplex DNA: molecular modeling of sequence-dependent effects on conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Solution structure by NMR and molecular dynamics of a duplex containing a guanine opposite a N-(2-deoxy-beta-D-erythro-pentofuranosyl)formamide lesion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Crystal structure of trp repressor/operator complex at atomic resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Crystal structure of a yeast TBP/TATA-box complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Sequence-dependent dynamics of TATA-Box binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

TFIID binds in the minor groove of the TATA box

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Interaction of TFIID in the minor groove of the TATA element

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: NonempiricalAb InitioCalculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0282%282001%2961%3A1%3C61%3A%3AAID-BIP10047%3E3.0.CO%3B2-1

10.1002/1097-0282(2001)61:1<61::AID-BIP10047>3.0.CO;2-1

21 January 2018

Identifiers

DOI

1 reference

3 August 2017

1 reference

PubMed ID

11891629