(Q34578435)

3 August 2017

title

Differential selection within the Drosophila retinal determination network and evidence for functional divergence between paralog pairs (English)

1 reference

3 August 2017

0 references

2

Tami Cruickshank

1 reference

3 August 2017

Rhea R Datta

1

1 reference

3 August 2017

Justin P Kumar

series ordinal

3

1 reference

3 August 2017

publication date

1 January 2011

1 reference

3 August 2017

published in

Evolution & Development

1 reference

3 August 2017

volume

13

1 reference

3 August 2017

issue

1

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3 August 2017

page(s)

58-71

1 reference

Identification of retinal transformation hot spots in developing Drosophila epithelia

3 August 2017

cites work

1 reference

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The non-conserved C-terminal segments of Sine Oculis Homeobox (SIX) proteins confer functional specificity

7 July 2018

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Transcriptional activities of the Pax6 gene eyeless regulate tissue specificity of ectopic eye formation in Drosophila.

7 July 2018

1 reference

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Restriction of ectopic eye formation by Drosophila teashirt and tiptop to the developing antenna

7 July 2018

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The molecular circuitry governing retinal determination

7 July 2018

1 reference

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The sine oculis homeobox (SIX) family of transcription factors as regulators of development and disease

7 July 2018

1 reference

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Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

7 July 2018

1 reference

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Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

7 July 2018

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Do teashirt family genes specify trunk identity? Insights from the single tiptop/teashirt homolog of Tribolium castaneum.

7 July 2018

1 reference

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Differential requirements for the Pax6(5a) genes eyegone and twin of eyegone during eye development in Drosophila.

7 July 2018

1 reference

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Evolution of genes and genomes on the Drosophila phylogeny

7 July 2018

1 reference

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A Hox-Eya-Pax complex regulates early kidney developmental gene expression

7 July 2018

1 reference

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Generating patterned arrays of photoreceptors.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

distal antenna and distal antenna-related function in the retinal determination network during eye development in Drosophila

7 July 2018

1 reference

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

7 July 2018

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Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Sine oculis, a member of the SIX family of transcription factors, directs eye formation

7 July 2018

1 reference

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Duplication events and the evolution of segmental identity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Gene duplication and the properties of biological networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Eyg and Ey Pax proteins act by distinct transcriptional mechanisms in Drosophila development.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Fly SIX-type homeodomain proteins Sine oculis and Optix partner with different cofactors during eye development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Signaling circuitries in development: insights from the retinal determination gene network

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Conservation and non-conservation of genetic pathways in eye specification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Spalt transcription factors are required for R3/R4 specification and establishment of planar cell polarity in the Drosophila eye.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The evolution of developmental mechanisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Pseudogenes: Are They “Junk” or Functional DNA?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The evolutionary demography of duplicate genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Six1 is required for the early organogenesis of mammalian kidney

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Decoding olfaction in Drosophila.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Identification of pseudogenes in the Drosophila melanogaster genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Pax6; a pleiotropic player in development.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Dominant-negative form of the Pax6 homolog eyeless for tissue-specific loss-of-function studies in the developing eye and brain in drosophila.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The evolution of engrailed genes after duplication and speciation events

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Mammalian homologues of the Drosophila eye specification genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Signalling pathways in Drosophila and vertebrate retinal development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Drosophila Pax-6/eyeless is essential for normal adult brain structure and function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The evolutionary fate and consequences of duplicate genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Early development of the Drosophila mushroom body: the roles of eyeless and dachshund.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Vertebrate eye development as modeled in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

From worm to man: three subfamilies of TRP channels

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Genetic control of development of the mushroom bodies, the associative learning centers in the Drosophila brain, by the eyeless, twin of eyeless, and Dachshund genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The probability of duplicate gene preservation by subfunctionalization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Synergistic regulation of vertebrate muscle development by Dach2, Eya2, and Six1, homologs of genes required for Drosophila eye formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

From insect eye to vertebrate muscle: redeployment of a regulatory network

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Evolutionary preservation of redundant duplicated genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Gene function, gene networks and the fate of duplicated genes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

A conserved blueprint for the eye?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Pax 6: mastering eye morphogenesis and eye evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Preservation of duplicate genes by complementary, degenerative mutations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Targeted expression of teashirt induces ectopic eyes in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Eya1 expression in the developing ear and kidney: towards the understanding of the pathogenesis of Branchio-Oto-Renal (BOR) syndrome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Lune/eye gone, a Pax-like protein, uses a partial paired domain and a homeodomain for DNA recognition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Mammalian and Drosophila dachshund genes are related to the Ski proto-oncogene and are expressed in eye and limb

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Multiple roles of the eyes absent gene in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The Homothorax homeoprotein activates the nuclear localization of another homeoprotein, extradenticle, and suppresses eye development in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The eye-specification proteins So and Eya form a complex and regulate multiple steps in Drosophila eye development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The master control gene for morphogenesis and evolution of the eye.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

PAX-6 in development and evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The eyes absent gene: genetic control of cell survival and differentiation in the developing Drosophila eye.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Homology of the eyeless gene of Drosophila to the Small eye gene in mice and Aniridia in humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

sine oculis is a homeobox gene required for Drosophila visual system development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

dachshund encodes a nuclear protein required for normal eye and leg development in Drosophila.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Processed pseudogenes: characteristics and evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Role of gene duplication in evolution.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The gene teashirt is required for the development of Drosophila embryonic trunk segments and encodes a protein with widely spaced zinc finger motifs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The Pax-homeobox gene eyegone is involved in the subdivision of the thorax of Drosophila.

7 July 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Eyes absent, a key repressor of polar cell fate during Drosophila oogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Zinc-finger paralogues tsh and tio are functionally equivalent during imaginal development in Drosophila and maintain their expression levels through auto- and cross-negative feedback loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Drosophila nemo promotes eye specification directed by the retinal determination gene network

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Patterns of internal gene duplication in the course of metazoan evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

The Drosophila sine oculis locus encodes a homeodomain-containing protein required for the development of the entire visual system

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Rotation of photoreceptor clusters in the developing Drosophila eye requires the nemo gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

twin of eyeless, a second Pax-6 gene of Drosophila, acts upstream of eyeless in the control of eye development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Differential selection after duplication in mammalian developmental genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

A somatic role for eyes absent (eya) and sine oculis (so) in Drosophila spermatocyte development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Duplicate genes increase gene expression diversity within and between species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Specification of primary pigment cell and outer photoreceptor fates by BarH1 homeobox gene in the developing Drosophila eye.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

The evolution of functionally novel proteins after gene duplication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Molecular regulators involved in vertebrate eye development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Differential expression and function of the Drosophila Pax6 genes eyeless and twin of eyeless in embryonic central nervous system development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Partner specificity is essential for proper function of the SIX-type homeodomain proteins Sine oculis and Optix during fly eye development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

A critical role of teashirt for patterning the ventral epidermis is masked by ectopic expression of tiptop, a paralog of teashirt in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Gene regulatory network growth by duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Development of neural lineages derived from the sine oculis positive eye field of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1525-142X.2010.00456.X

Molecular evolution of the Drosophila retinome: exceptional gene gain in the higher Diptera

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Inferring evolutionary trees with PAUP*.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Drosophila chemoreceptor gene evolution: selection, specialization and genome size

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Pax-Six-Eya-Dach network during amphioxus development: conservation in vitro but context specificity in vivo

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Genetic determination of nephrogenesis: the Pax/Eya/Six gene network.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The Drosophila homeobox gene optix is capable of inducing ectopic eyes by an eyeless-independent mechanism.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

The Drosophila eyes absent gene directs ectopic eye formation in a pathway conserved between flies and vertebrates.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Ectopic eye development in Drosophila induced by directed dachshund expression.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3040041

Thymus, kidney and craniofacial abnormalities in Six 1 deficient mice

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21210943

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1111/J.1525-142X.2010.00456.X

1 reference

3 August 2017

1 reference

3 August 2017

1 reference