(Q34597969)

3 August 2017

title

PcG-mediated higher-order chromatin structures modulate replication programs at the Drosophila BX-C. (English)

1 reference

3 August 2017

0 references

Federica Lo Sardo

1

0 references

Chiara Lanzuolo

object named as

Chiara Lanzuolo

2

0 references

Federico Comoglio

object named as

Federico Comoglio

3

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author name string

Marco De Bardi

4

1 reference

3 August 2017

Renato Paro

5

1 reference

3 August 2017

Valerio Orlando

6

1 reference

3 August 2017

publication date

21 February 2013

1 reference

3 August 2017

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3 August 2017

volume

9

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3 August 2017

issue

2

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3 August 2017

page(s)

e1003283

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Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

21 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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USF binding sequences from the HS4 insulator element impose early replication timing on a vertebrate replicator.

7 July 2018

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Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs

7 July 2018

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7 July 2018

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PcG complexes set the stage for epigenetic inheritance of gene silencing in early S phase before replication

7 July 2018

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Histone hypoacetylation is required to maintain late replication timing of constitutive heterochromatin.

7 July 2018

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Genome-wide remodeling of the epigenetic landscape during myogenic differentiation.

7 July 2018

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A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber

7 July 2018

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Silencing chromatin: comparing modes and mechanisms

7 July 2018

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Chromatin signatures of the Drosophila replication program

7 July 2018

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Polycomb preferentially targets stalled promoters of coding and noncoding transcripts

7 July 2018

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Cohesin organizes chromatin loops at DNA replication factories.

7 July 2018

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Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

7 July 2018

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Heterochromatin protein 1 (HP1) modulates replication timing of the Drosophila genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Differences in the epigenetic and reprogramming properties of pluripotent and extra-embryonic stem cells implicate chromatin remodelling as an important early event in the developing mouse embryo

7 July 2018

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Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

7 July 2018

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Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

7 July 2018

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EZH2-dependent chromatin looping controls INK4a and INK4b, but not ARF, during human progenitor cell differentiation and cellular senescence.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Shifts in replication timing actively affect histone acetylation during nucleosome reassembly

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Polycomb mediated epigenetic silencing and replication timing at the INK4a/ARF locus during senescence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Replication timing and transcriptional control: beyond cause and effect--part II.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Replication timing as an epigenetic mark

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Early replication timing of the chicken alpha-globin gene domain correlates with its open chromatin state in cells of different lineages.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

PcG proteins, DNA methylation, and gene repression by chromatin looping.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Global reorganization of replication domains during embryonic stem cell differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Distribution of DNA replication proteins in Drosophila cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

A question of timing: emerging links between transcription and replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

A dynamic switch in the replication timing of key regulator genes in embryonic stem cells upon neural induction.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

The chromatin remodeling complex NoRC controls replication timing of rRNA genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Epigenome changes in active and inactive polycomb-group-controlled regions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Hierarchical recruitment of polycomb group silencing complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Early-replicating heterochromatin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Histone methyltransferase activity of a Drosophila Polycomb group repressor complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Role of histone H3 lysine 27 methylation in Polycomb-group silencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Replication and subnuclear location dynamics of the immunoglobulin heavy-chain locus in B-lineage cells.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Developmental regulation of DNA replication timing at the human beta globin locus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Drosophila chromosome condensation proteins Topoisomerase II and Barren colocalize with Polycomb and maintain Fab-7 PRE silencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

A conserved sequence motif in Polycomb-response elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Accessibility of the Drosophila genome discriminates PcG repression, H4K16 acetylation and replication timing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

The impact of nucleosome positioning on the organization of replication origins in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Concerted epigenetic signatures inheritance at PcG targets through replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Coordination of replication and transcription along a Drosophila chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Mitotic remodeling of the replicon and chromosome structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

General transcription factors bind promoters repressed by Polycomb group proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Profiling of DNA replication timing in unsynchronized cell populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003283

Reprogramming of DNA replication timing.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

Polycomb group proteins and heritable silencing of Drosophila Hox genes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578750

10.1371/JOURNAL.PGEN.1003283

26 October 2018

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference