(Q34600960)

3 August 2017

title

Gated binding of ligands to HIV-1 protease: Brownian dynamics simulations in a coarse-grained model (English)

1 reference

3 August 2017

Tongye Shen

2

0 references

Valentina Tozzini

object named as

Valentina Tozzini

series ordinal

4

0 references

Joanna Trylska

series ordinal

3

object named as

Joanna Trylska

1 reference

3 August 2017

5

J Andrew McCammon

1 reference

3 August 2017

Chia-En Chang

1

1 reference

3 August 2017

language of work or name

English

0 references

publication date

13 March 2006

1 reference

3 August 2017

1 reference

3 August 2017

volume

90

1 reference

3 August 2017

issue

11

1 reference

3 August 2017

page(s)

3880-3885

1 reference

HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Exploring global motions and correlations in the ribosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Coarse-grained models for proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Structure and mechanism of monoamine oxidase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

The emerging structural understanding of transglutaminase 3

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Finite element solution of the steady-state Smoluchowski equation for rate constant calculations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Closed conformation of the active site loop of rabbit muscle triosephosphate isomerase in the absence of substrate: evidence of conformational heterogeneity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

A solution NMR study of the binding kinetics and the internal dynamics of an HIV-1 protease-substrate complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Elucidation of HIV-1 protease resistance by characterization of interaction kinetics between inhibitors and enzyme variants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Coarse-graining in polymer simulation: from the atomistic to the mesoscopic scale and back

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

HIV protease inhibitors: peptidomimetic drugs and future perspectives

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Kinetic studies of protein-protein interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

7 July 2018

Superefficient enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Kinetics of diffusion-assisted reactions in microheterogeneous systems.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Conformation gating as a mechanism for enzyme specificity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Residue-residue mean-force potentials for protein structure recognition.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

The emerging three-dimensional structure of a receptor. The nicotinic acetylcholine receptor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Gating of the active site of triose phosphate isomerase: Brownian dynamics simulations of flexible peptide loops in the enzyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Kinetics of protein-protein association explained by Brownian dynamics computer simulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

The Protein Data Bank: a computer-based archival file for macromolecular structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Exploring the charge space of protein-protein association: a proteomic study.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Finite concentration effects on diffusion-controlled reactions

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Atomistic Brownian dynamics simulation of peptide phosphorylation

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Mapping the pathways for O2 entry into and exit from myoglobin.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459512

Gated binding of ligands to proteins

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16533835

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Simulation of enzyme–substrate encounter with gated active sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16533835

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rate-determining steps in HIV-1 protease catalysis. The hydrolysis of the most specific substrate

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16533835

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.105.074575

1 reference

3 August 2017

1 reference

3 August 2017

1 reference