(Q34606972)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Pseudomonas syringae

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

author name string

Sitanshu S Sahu

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Rakesh Kaundal

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

publication date

21 October 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

volume

15 Suppl 11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

page(s)

S13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

22 February 2020

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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1 reference

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Molecular signatures in Arabidopsis thaliana in response to insect attack and bacterial infection.

7 July 2018

1 reference

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Prediction and comparison of Salmonella-human and Salmonella-Arabidopsis interactomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Computational prediction of host-parasite protein interactions between P. falciparum and H. sapiens

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Independently evolved virulence effectors converge onto hubs in a plant immune system network

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Plant targets for Pseudomonas syringae type III effectors: virulence targets or guarded decoys?

7 July 2018

1 reference

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Effective--a database of predicted secreted bacterial proteins

7 July 2018

1 reference

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HPIDB - a unified resource for host-pathogen interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Metal hyperaccumulation armors plants against disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Deciphering host resistance and pathogen virulence: the Arabidopsis/Pseudomonas interaction as a model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

7 July 2018

1 reference

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Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Host pathogen protein interactions predicted by comparative modeling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

PRISM: protein interactions by structural matching

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

InterProScan: protein domains identifier

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Suppression of host defense in compatible plant-Pseudomonas syringae interactions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

The nuclear localization of the Arabidopsis transcription factor TIP is blocked by its interaction with the coat protein of Turnip crinkle virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Strategies used by bacterial pathogens to suppress plant defenses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

Integrative approach for computationally inferring protein domain interactions

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S13

Computational prediction of host-pathogen protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S13

Receptor-mediated activation of a MAP kinase in pathogen defense of plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S13

Combining machine learning and homology-based approaches to accurately predict subcellular localization in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S13

Protein interactions involved in nuclear import of the Agrobacterium VirE2 protein in vivo and in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-S11-S13

Erwinia chrysanthemi requires a second iron transport route dependent of the siderophore achromobactin for extracellular growth and plant infection

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251041

10.1186/1471-2105-15-S11-S13

26 October 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

DBLP publication ID

journals/bmcbi/SahuWK14

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25350354%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

25350354

1 reference