(Q34616355)

3 August 2017

title

The differential transcription network between embryo and endosperm in the early developing maize seed (English)

1 reference

3 August 2017

Xiaoduo Lu

1

1 reference

3 August 2017

Dijun Chen

2

1 reference

3 August 2017

Defeng Shu

3

1 reference

3 August 2017

Zhao Zhang

4

1 reference

3 August 2017

Weixuan Wang

5

1 reference

3 August 2017

Christian Klukas

6

1 reference

3 August 2017

Ling-ling Chen

7

1 reference

3 August 2017

Yunliu Fan

8

1 reference

3 August 2017

Ming Chen

9

1 reference

3 August 2017

Chunyi Zhang

10

1 reference

3 August 2017

language of work or name

English

0 references

publication date

11 March 2013

1 reference

3 August 2017

number of pages

16

1 reference

inferred from page(s)

published in

Plant Physiology

1 reference

3 August 2017

volume

162

1 reference

3 August 2017

issue

1

1 reference

3 August 2017

page(s)

440-455

1 reference

Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

25 January 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq

26 October 2018

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26 October 2018

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Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

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Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm

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Functional consequences of developmentally regulated alternative splicing

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Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism.

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The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice.

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Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

26 October 2018

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Transcription factors regulating the progression of monocot and dicot seed development.

26 October 2018

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26 October 2018

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The developmental dynamics of the maize leaf transcriptome

26 October 2018

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Epigenetic reprogramming in plant and animal development

26 October 2018

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Conservation of an RNA regulatory map between Drosophila and mammals

26 October 2018

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Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

26 October 2018

1 reference

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Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing

26 October 2018

1 reference

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An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

agriGO: a GO analysis toolkit for the agricultural community

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Dissecting grain yield pathways and their interactions with grain dry matter content by a two-step correlation approach with maize seedling transcriptome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Alternative splicing and evolution: diversification, exon definition and function

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

siRNAs and DNA methylation: seedy epigenetics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Expansion of the eukaryotic proteome by alternative splicing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

The B73 Maize Genome: Complexity, Diversity, and Dynamics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

A joint transcriptomic, proteomic and metabolic analysis of maize endosperm development and starch filling

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Genome-wide demethylation of Arabidopsis endosperm.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Fast and accurate short read alignment with Burrows-Wheeler transform

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

TopHat: discovering splice junctions with RNA-Seq

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

RNA-Seq: a revolutionary tool for transcriptomics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Alternative isoform regulation in human tissue transcriptomes

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Stem cell transcriptome profiling via massive-scale mRNA sequencing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Mapping and quantifying mammalian transcriptomes by RNA-Seq

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

The transcriptional landscape of the yeast genome defined by RNA sequencing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Endosperm gene imprinting and seed development

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Transcriptomic and proteomic analyses of pericycle cells of the maize primary root

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.).

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Alternative splicing of pre-messenger RNAs in plants in the genomic era.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Alternative splicing: new insights from global analyses

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Genomewide comparative analysis of alternative splicing in plants

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Transcriptionally active transposable elements in recent hybrid sugarcane.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Java Treeview--extensible visualization of microarray data

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Nuclear endosperm development in cereals and Arabidopsis thaliana

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Open source clustering software

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Mechanisms of alternative pre-messenger RNA splicing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

The generic genome browser: a building block for a model organism system database

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Control of early seed development

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Genomics analysis of genes expressed in maize endosperm identifies novel seed proteins and clarifies patterns of zein gene expression

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

LEAFY COTYLEDON2 encodes a B3 domain transcription factor that induces embryo development.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

The maize CR4 receptor-like kinase mediates a growth factor-like differentiation response.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Expression patterns of genes encoding HD-ZipIV homeo domain proteins define specific domains in maize embryos and meristems

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Evidence for factors regulating transfer cell-specific expression in maize endosperm.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Identification of a promoter sequence from the BETL1 gene cluster able to confer transfer-cell-specific expression in transgenic maize

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

ZmOCL1, an HDGL2 family homeobox gene, is expressed in the outer cell layer throughout maize development.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Developmental biology of the cereal endosperm

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Loss-of-function mutations in the maize homeobox gene, knotted1, are defective in shoot meristem maintenance.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Endosperm origin, development, and function

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Molecular characterization of BET1, a gene expressed in the endosperm transfer cells of maize

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Spatial and temporal expression of a maize lipid transfer protein gene

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641222

RNA-directed DNA methylation

9 December 2018

1 reference

12 December 2020

A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron

1 reference

12 December 2020

Controlling lipid accumulation in cereal grains

1 reference

12 December 2020

Active retrotransposons are a common feature of grass genomes

1 reference

12 December 2020

Identification of an active LTR retrotransposon in rice.

1 reference

12 December 2020

An Arabidopsis gene encoding a C2H2-domain protein with alternatively spliced transcripts is essential for endosperm development

1 reference

12 December 2020

Transposable elements in Coffea (Gentianales: Rubiacea) transcripts and their role in the origin of protein diversity in flowering plants

1 reference

12 December 2020

Alternative splicing and mRNA levels of the disease resistance gene RPS4 are induced during defense responses

1 reference

12 December 2020

The opaque-2 mutation of maize differentially reduces zein gene transcription

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.113.214874

1 reference

3 August 2017

0 references

1 reference