(Q34622555)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

0 references

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

author name string

Nathaniel K Jue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Michael B Murphy

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Sohaib M Qureshi

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Craig J Obergfell

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Sahar Elsisi

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Robert J Foley

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Rachel J O'Neill

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Michael J O'Neill

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

language of work or name

English

0 references

publication date

6 March 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

page(s)

150

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

26 February 2020

1 reference

Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Repetitive DNA and next-generation sequencing: computational challenges and solutions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Mouse genomic variation and its effect on phenotypes and gene regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Differential expression in RNA-seq: a matter of depth

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Some inconvenient truths about sex chromosome dosage compensation and the potential role of sexual conflict.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Evolutionary diversity and developmental regulation of X-chromosome inactivation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Widespread RNA and DNA sequence differences in the human transcriptome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

RNA-sequence analysis of human B-cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

RNA sequencing shows no dosage compensation of the active X-chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Polymorphic cis- and trans-regulation of human gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Targeting X chromosomes for repression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

All dosage compensation is local: gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Alternative isoform regulation in human tissue transcriptomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

The status of dosage compensation in the multiple X chromosomes of the platypus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Stem cell transcriptome profiling via massive-scale mRNA sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Dosage compensation in the mouse balances up-regulation and silencing of X-linked genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Dosage compensation is less effective in birds than in mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Dosage compensation, the origin and the afterlife of sex chromosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Sex chromosome specialization and degeneration in mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Global analysis of X-chromosome dosage compensation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Dosage compensation of the active X chromosome in mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Dosage compensation in sciarids is achieved by hypertranscription of the single X chromosome in males

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Model for evolution of Y chromosomes and dosage compensation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Evidence for dosage compensation between the X chromosome and autosomes in mammals.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-150

Female-biased expression on the X chromosome as a key step in sex chromosome evolution in threespine sticklebacks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-150

Identification of novel transcripts in annotated genomes using RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-150

A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-150

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome".

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3769146

Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23497106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A FACTOR FOR THE FOURTH CHROMOSOME OF DROSOPHILA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23497106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23497106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-150

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23497106%20AND%20SRC:MED&resulttype=core&format=json