(Q34633932)

3 August 2017

title

Extensive copy-number variation of young genes across stickleback populations (English)

1 reference

3 August 2017

9

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3 August 2017

Mahesh Panchal

3

0 references

Tobias L. Lenz

Tobias L Lenz

7

0 references

Christophe Eizaguirre

Christophe Eizaguirre

4

0 references

Martin Kalbe

6

Martin Kalbe

1 reference

3 August 2017

10

Manfred Milinski

1 reference

3 August 2017

11

Thorsten B H Reusch

1 reference

3 August 2017

Frédéric J J Chain

1

1 reference

3 August 2017

Philine G D Feulner

2

1 reference

3 August 2017

Irene E Samonte

5

1 reference

3 August 2017

Monika Stoll

8

1 reference

3 August 2017

publication date

4 December 2014

1 reference

3 August 2017

1 reference

3 August 2017

volume

10

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3 August 2017

issue

12

1 reference

3 August 2017

page(s)

e1004830

1 reference

Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

4 December 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ggplot2

ggplot2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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7 July 2018

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7 July 2018

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7 July 2018

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Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks

7 July 2018

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7 July 2018

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7 July 2018

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Population genetic nature of copy number variation

7 July 2018

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7 July 2018

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7 July 2018

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The evolutionary origin of orphan genes

7 July 2018

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Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

7 July 2018

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The variant call format and VCFtools

7 July 2018

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7 July 2018

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7 July 2018

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High spontaneous rate of gene duplication in Caenorhabditis elegans

7 July 2018

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The ecoresponsive genome of Daphnia pulex

7 July 2018

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Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Diversity of human copy number variation and multicopy genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

7 July 2018

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7 July 2018

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Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

7 July 2018

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7 July 2018

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More than just orphans: are taxonomically-restricted genes important in evolution?

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Comparative analysis of copy number variation in primate genomes

7 July 2018

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Positive Darwinian selection and the birth of an olfactory receptor clade in teleosts

7 July 2018

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Evolutionary patterns and selective pressures of odorant/pheromone receptor gene families in teleost fishes

7 July 2018

1 reference

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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Turning a hobby into a job: how duplicated genes find new functions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Selectome: a database of positive selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

A genome-wide view of the spectrum of spontaneous mutations in yeast.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Analyzing real-time PCR data by the comparative C(T) method

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Assessing the evolutionary impact of amino acid mutations in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

The current excitement about copy-number variation: how it relates to gene duplications and protein families

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Germline rates of de novo meiotic deletions and duplications causing several genomic disorders

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Paired-end mapping reveals extensive structural variation in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Diet and the evolution of human amylase gene copy number variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

A novel olfactory receptor gene family in teleost fish.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Mutational and selective effects on copy-number variants in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

PAML 4: phylogenetic analysis by maximum likelihood

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Global variation in copy number in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Hotspots for copy number variation in chimpanzees and humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Application of phylogenetic networks in evolutionary studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

The lysosomal cysteine proteases in MHC class II antigen presentation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Segmental duplications and copy-number variation in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Simultaneous inference of selection and population growth from patterns of variation in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Mate choice decisions of stickleback females predictably modified by MHC peptide ligands

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Detection of large-scale variation in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Large-scale copy number polymorphism in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

The effect of gene conversion on the divergence between duplicated genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Neighbor-net: an agglomerative method for the construction of phylogenetic networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

The origin of new genes: glimpses from the young and old

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

The genetic architecture of divergence between threespine stickleback species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Cathepsin A/protective protein: an unusual lysosomal multifunctional protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

The evolutionary fate and consequences of duplicate genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

CAP3: A DNA sequence assembly program

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Evolution. The synthesis and evolution of a supermodel

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Gene copy-number polymorphism in nature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Distribution and functional impact of DNA copy number variation in the rat.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Speciation accelerated and stabilized by pleiotropic major histocompatibility complex immunogenes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Genetic variation in MHC class II expression and interactions with MHC sequence polymorphism in three-spined sticklebacks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004830

Statistical tests for detecting gene conversion.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256280

Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium

26 October 2018

1 reference

12 December 2020

The role of gene conversion in preserving rearrangement hotspots in the human genome

1 reference

12 December 2020

GLOBAL SURVEY OF MITOCHONDRIAL DNA SEQUENCES IN THE THREESPINE STICKLEBACK: EVIDENCE FOR RECENT MIGRATIONS.

1 reference

12 December 2020

Polymorphism of MHC class III genes: definition of restriction fragment linkage groups and evidence for frequent deletions and duplications

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1004830

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference