(Q34636456)

3 August 2017

A systematic comparison of the MetaCyc and KEGG pathway databases (English)

1 reference

3 August 2017

5

1 reference

3 August 2017

Ron Caspi

4

0 references

author name string

Tomer Altman

series ordinal

1

1 reference

PubMed ID

23530693

3 August 2017

Michael Travers

series ordinal

2

1 reference

PubMed ID

23530693

3 August 2017

Anamika Kothari

series ordinal

3

1 reference

3 August 2017

27 March 2013

1 reference

3 August 2017

1 reference

3 August 2017

14

1 reference

3 August 2017

112

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-112

3 August 2017

0 references

cites work

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Metabolic reconstruction for metagenomic data and its application to the human microbiome

7 July 2018

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7 July 2018

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MetaMerge: scaling up genome-scale metabolic reconstructions, with application to Mycobacterium tuberculosis

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

1 reference

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

7 July 2018

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KEGG for integration and interpretation of large-scale molecular data sets

7 July 2018

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Critical assessment of human metabolic pathway databases: a stepping stone for future integration

7 July 2018

1 reference

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BKM-react, an integrated biochemical reaction database

7 July 2018

1 reference

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A survey of metabolic databases emphasizing the MetaCyc family

7 July 2018

1 reference

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Consistency, comprehensiveness, and compatibility of pathway databases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

High-throughput generation, optimization and analysis of genome-scale metabolic models

7 July 2018

1 reference

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What is flux balance analysis?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

Machine learning methods for metabolic pathway prediction

7 July 2018

1 reference

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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

7 July 2018

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KEGG for representation and analysis of molecular networks involving diseases and drugs

7 July 2018

1 reference

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

7 July 2018

1 reference

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BioBIKE: a Web-based, programmable, integrated biological knowledge base

7 July 2018

1 reference

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The Universal Protein Resource (UniProt) 2009

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

KEGG Atlas mapping for global analysis of metabolic pathways

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

The Gene Ontology project in 2008

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

A survey of orphan enzyme activities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

Enrichment or depletion of a GO category within a class of genes: which test?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

The outcomes of pathway database computations depend on pathway ontology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

MetaCyc: a multiorganism database of metabolic pathways and enzymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

From genomics to chemical genomics: new developments in KEGG

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

Call for an enzyme genomics initiative

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

The KEGG resource for deciphering the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

The KEGG databases at GenomeNet

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

The EcoCyc and MetaCyc databases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

KEGG: kyoto encyclopedia of genes and genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

KEGG: Kyoto Encyclopedia of Genes and Genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3665663

SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules

7 July 2018

1 reference

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1021/CI00057A005

Identifiers

DOI

10.1186/1471-2105-14-112

1 reference

journals/bmcbi/AltmanTKCK13

3 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

3 August 2017

1 reference

PubMed ID

23530693