(Q34649523)

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Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Lacticaseibacillus casei

1 reference

based on heuristic

inferred from title

comparative genomics

1 reference

based on heuristic

inferred from title

Lactobacillus gasseri

object named as

Lactobacillus gasseri

1 reference

based on heuristic

inferred from title

Ligilactobacillus salivarius

object named as

Lactobacillus salivarius

1 reference

based on heuristic

inferred from title

4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Sinead C. Leahy

9

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Todd R. Klaenhammer

15

object named as

Todd R Klaenhammer

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Carlos Canchaya

object named as

Carlos Canchaya

2

0 references

Marcus J Claesson

object named as

Marcus J Claesson

7

0 references

Jeff R Broadbent

object named as

Jeff Broadbent

14

0 references

Rodolphe Barrangou

object named as

Rodolphe Barrangou

5

0 references

object named as

Yin Li

8

0 references

object named as

Paul W O'toole

17

0 references

object named as

Marco Ventura

1

0 references

Douwe van Sinderen

18

object named as

Douwe van Sinderen

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

author name string

Valentina Bernini

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Stephen McGrath

6

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Carey D Walker

10

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Ralf Zink

11

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Erasmo Neviani

12

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Jim Steele

13

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Gerald F Fitzgerald

16

1 reference

Europe PubMed Central

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3 August 2017

language of work or name

0 references

publication date

1 May 2006

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Applied and Environmental Microbiology

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

72

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

3130-3146

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Integration and distribution of Lactobacillus johnsonii prophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Prophage genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Complete genome sequence of Lactobacillus plantarum WCFS1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Common themes among bacteriophage-encoded virulence factors and diversity among the bacteriophages involved

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

The Phage Proteomic Tree: a genome-based taxonomy for phage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Identification of a novel family of sequence repeats among prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic Streptococci: evolutionary implications for prophage-host interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Analysis of six prophages in Lactococcus lactis IL1403: different genetic structure of temperate and virulent phage populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Comparative genomics of the late gene cluster from Lactobacillus phages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Widespread distribution of a group I intron and its three deletion derivatives in the lysin gene of Streptococcus thermophilus bacteriophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Similarly organized lysogeny modules in temperate Siphoviridae from low GC content gram-positive bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

The groESL chaperone operon of Lactobacillus johnsonii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Molecular characterization of a phage-encoded resistance system in Lactococcus lactis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Complete nucleotide sequence and molecular characterization of the temperate staphylococcal bacteriophage phiPVL carrying Panton-Valentine leukocidin genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Combining the hok/sok, parDE, and pnd postsegregational killer loci to enhance plasmid stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Genome structure of the Lactobacillus temperate phage phi g1e: the whole genome sequence and the putative promoter/repressor system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Identification of prophage genes expressed in lysogens of the Lactococcus lactis bacteriophage BK5-T.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Mechanisms of genome propagation and helper exploitation by satellite phage P4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Primary structure and functional analysis of the lysis genes of Lactobacillus gasseri bacteriophage phi adh

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Rapid and sensitive protein similarity searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lacto

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

7 July 2018

Genomic organization and molecular analysis of the inducible prophage EJ-1, a mosaic myovirus from an atypical pneumococcus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

26 October 2018

Isolation and characterization of a Lactobacillus plantarum bacteriophage, phiJL-1, from a cucumber fermentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

26 October 2018

Transcription analysis of Streptococcus thermophilus phages in the lysogenic state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

26 October 2018

Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilus phage Sfi21.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

26 October 2018

Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

26 October 2018

Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage (phi)adh

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1472345

26 October 2018

The prophage sequences of Lactobacillus plantarum strain WCFS1

1 reference

https://pubmed.ncbi.nlm.nih.gov/16672450

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The urea cycle of Helicobacter pylori

1 reference

https://pubmed.ncbi.nlm.nih.gov/16672450

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.72.5.3130-3146.2006

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

release_qecc5mbacrba7po3u325x6bkni

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24 November 2022

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

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