(Q34662029)

3 August 2017

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage (English)

1 reference

3 August 2017

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1 reference

16

1 reference

3 August 2017

12

Ramunas Stepanauskas

0 references

Tanja Woyke

14

Tanja Woyke

0 references

Alexander Sczyrba

11

Alexander Sczyrba

0 references

Patrick Schwientek

5

Patrick Schwientek

0 references

Manuel Martínez-García

Manuel Martinez-Garcia

10

0 references

Katherine D. McMahon

Katherine D McMahon

18

0 references

Stefan Bertilsson

17

Stefan Bertilsson

1 reference

3 August 2017

6

Katrina T Forest

1 reference

3 August 2017

13

Hans-Peter Grossart

1 reference

3 August 2017

15

Falk Warnecke

1 reference

3 August 2017

Trevor W Ghylin

1

1 reference

3 August 2017

Sarahi L Garcia

2

1 reference

3 August 2017

Francisco Moya

3

1 reference

3 August 2017

Ben O Oyserman

4

1 reference

3 August 2017

James Mutschler

7

1 reference

3 August 2017

Jeffrey Dwulit-Smith

8

1 reference

3 August 2017

Leong-Keat Chan

9

1 reference

3 August 2017

5 August 2014

1 reference

3 August 2017

14

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inferred from page(s)

published in

The ISME Journal

1 reference

3 August 2017

8

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3 August 2017

12

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3 August 2017

2503-2516

1 reference

maintained by WikiProject

3 August 2017

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2014.135

0 references

cites work

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Community shifts of actively growing lake bacteria after N-acetyl-glucosamine addition: improving the BrdU-FACS method

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Streamlining and core genome conservation among highly divergent members of the SAR11 clade

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

IMG: the Integrated Microbial Genomes database and comparative analysis system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

The Pfam protein families database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Production optimization of cyanophycinase ChpEal from Pseudomonas alcaligenes DIP1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Accelerated Profile HMM Searches

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Metagenomics of the water column in the pristine upper course of the Amazon river

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

A guide to the natural history of freshwater lake bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Reconstitution of gloeobacter rhodopsin with echinenone: role of the 4-keto group

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Prodigal: prokaryotic gene recognition and translation initiation site identification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Contrasting ability to take up leucine and thymidine among freshwater bacterial groups: implications for bacterial production measurements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Assembling the marine metagenome, one cell at a time

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Substrate incorporation patterns of bacterioplankton populations in stratified and mixed waters of a humic lake

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

The Transporter Classification Database: recent advances

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

A rapid bootstrap algorithm for the RAxML Web servers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Transcriptome analysis of agmatine and putrescine catabolism in Pseudomonas aeruginosa PAO1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Phylogenetic ecology of the freshwater Actinobacteria acI lineage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by 16S rRNA gene sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

ARB: a software environment for sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Isolation of cyanophycin-degrading bacteria, cloning and characterization of an extracellular cyanophycinase gene (cphE) from Pseudomonas anguilliseptica strain BI. The cphE gene from P. anguilliseptica BI encodes a cyanophycinhydrolyzing enzyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Evaluation of non-cyanobacterial genome sequences for occurrence of genes encoding proteins homologous to cyanophycin synthetase and cloning of an active cyanophycin synthetase from Acinetobacter sp. strain DSM 587

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Pathogenicity islands and the evolution of microbes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Cyanophycinase, a peptidase degrading the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartic acid (cyanophycin): molecular cloning of the gene of Synechocystis sp. PCC 6803, expression in Escherichia coli, and biochemical characterizati

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4260696

Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium

7 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Characterization and a role of Pseudomonas aeruginosa spermidine dehydrogenase in polyamine catabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbon

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Analysis of genome sequences for genes of cyanophycin metabolism: identifying putative cyanophycin metabolizing prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Successful enrichment of the ubiquitous freshwater acI Actinobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Selenite and tellurite reduction by Shewanella oneidensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2014.135

Isolation and characterization of gram-positive cyanophycin-degrading bacteria-kinetic studies on cyanophycin depolymerase activity in aerobic bacteria

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25093637

12 December 2020

inferred from PubMed ID database lookup

Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25093637

12 December 2020

inferred from PubMed ID database lookup

Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25093637

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/ISMEJ.2014.135

1 reference

Dimensions Publication ID

3 August 2017

0 references

1 reference

3 August 2017

1 reference