(Q34669474)

3 August 2017

title

Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4. (English)

1 reference

3 August 2017

1 reference

0 references

Anton S Petrov

1

1 reference

3 August 2017

Stephen C Harvey

series ordinal

2

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3 August 2017

publication date

11 November 2010

1 reference

Journal of Structural Biology

3 August 2017

published in

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3 August 2017

volume

174

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3 August 2017

issue

1

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3 August 2017

page(s)

137-146

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YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models

3 August 2017

cites work

1 reference

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The bacteriophage genome undergoes a succession of intracapsid phase transitions upon DNA ejection

7 July 2018

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Structure of toroidal DNA collapsed inside the phage capsid.

7 July 2018

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7 July 2018

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7 July 2018

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Packaging double-helical DNA into viral capsids: structures, forces, and energetics

7 July 2018

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Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations.

7 July 2018

1 reference

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Effects of salt concentrations and bending energy on the extent of ejection of phage genomes

7 July 2018

1 reference

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Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29.

7 July 2018

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Packaging of DNA by bacteriophage epsilon15: structure, forces, and thermodynamics

7 July 2018

1 reference

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DNA organization and thermodynamics during viral packing

7 July 2018

1 reference

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Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29.

7 July 2018

1 reference

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Structural and thermodynamic principles of viral packaging

7 July 2018

1 reference

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Effects of condensing agent and nuclease on the extent of ejection from phage lambda

7 July 2018

1 reference

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Langevin dynamics simulations of genome packing in bacteriophage

7 July 2018

1 reference

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The effect of genome length on ejection forces in bacteriophage lambda.

7 July 2018

1 reference

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Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus

7 July 2018

1 reference

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DNA knots reveal a chiral organization of DNA in phage capsids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Forces during bacteriophage DNA packaging and ejection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Interhelical spacing in liquid crystalline spermine and spermidine-DNA precipitates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

UCSF Chimera--a visualization system for exploratory research and analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Osmotic pressure inhibition of DNA ejection from phage.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Forces and pressures in DNA packaging and release from viral capsids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

DNA packaging and ejection forces in bacteriophage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Simple simulations of DNA condensation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

DNA condensation by multivalent cations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Macromolecules and water: probing with osmotic stress

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Double-stranded DNA organization in bacteriophage heads: an alternative toroid-based model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Structural transitions during maturation of bacteriophage lambda capsids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

DNA packaging in dsDNA bacteriophages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Condensation of DNA by multivalent cations: Considerations on mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Image reconstruction from cryo-electron micrographs reveals the morphopoietic mechanism in the P2-P4 bacteriophage system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

The structural organization of DNA packaged within the heads of T4 wild-type, isometric and giant bacteriophages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

DNA arrangement in isometric phage heads

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Mutants of Escherichia coli that do not contain 1,4-diaminobutane (putrescine) or spermidine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

DNA heats up: energetics of genome ejection from phage revealed by isothermal titration calorimetry.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Semiflexible chains in confined spaces.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

The role of DNA twist in the packaging of viral genomes.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Dynamics of polymer packaging.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Packaging double-helical DNA into viral capsids

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Investigation of viral DNA packaging using molecular mechanics models.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Three-dimensional architecture of the bacteriophage φ29 packaged genome and elucidation of its packaging process

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3056930

Polymer Packaging and Ejection in Viral Capsids: Shape Matters

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21074621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Structure of an Infectious P22 Virion Shows the Signal for Headful DNA Packaging

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21074621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A defined in vitro system for packaging of bacteriophage T3 DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21074621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JSB.2010.11.007

1 reference

3 August 2017

1 reference

3 August 2017

1 reference