(Q33878857)

29 July 2017

title

DNA knots reveal a chiral organization of DNA in phage capsids (English)

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29 July 2017

1 reference

1 reference

Joaquim Roca

6

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author name string

Javier Arsuaga

1

1 reference

29 July 2017

Mariel Vazquez

2

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29 July 2017

Paul McGuirk

3

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29 July 2017

Sonia Trigueros

4

1 reference

29 July 2017

De Witt Sumners

5

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29 July 2017

language of work or name

English

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publication date

15 June 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

issue

26

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29 July 2017

page(s)

9165-9169

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Structural studies on adenoviruses

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Forces and pressures in DNA packaging and release from viral capsids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Novel display of knotted DNA molecules by two-dimensional gel electrophoresis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Optimal shapes of compact strings.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

DNA packing in stable lipid complexes designed for gene transfer imitates DNA compaction in bacteriophage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Sedimentation and electrophoretic migration of DNA knots and catenanes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Encapsidated conformation of bacteriophage T7 DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Double-stranded DNA organization in bacteriophage heads: an alternative toroid-based model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Probability of DNA knotting and the effective diameter of the DNA double helix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Knotting of a DNA chain during ring closure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Monte Carlo computation of the supercoiling energy, the sedimentation constant, and the radius of gyration of unknotted and knotted circular DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

DNA packaging by the double-stranded DNA bacteriophages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Knotted DNA from bacteriophage capsids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Novel topologically knotted DNA from bacteriophage P4 capsids: studies with DNA topoisomerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Mode of DNA packing within bacteriophage heads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

On the sequence similarity of the cohesive ends of coliphage P4, P2, and 186 deoxyribonucleic acid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Location of DNA ends in P2, 186, P4 and lambda bacteriophage heads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Knotting of DNA molecules isolated from deletion mutants of intact bacteriophage P4.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Ion etching bacteriophage T4: support for a spiral-fold model of packaged DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Processive recombination by the phage Mu Gin system: implications for the mechanisms of DNA strand exchange, DNA site alignment, and enhancer action

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Supercoiled DNA-directed knotting by T4 topoisomerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

DNA arrangement in isometric phage heads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Isolation of knotted DNA from coliphage P4.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409323102

Geometry and physics of knots

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409323102

Electrophoretic mobility of DNA knots

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409323102

Tightness of random knotting

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409323102

Packaging double-helical DNA into viral capsids

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409323102

Investigation of viral DNA packaging using molecular mechanics models.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1166588

Arrangement of double-stranded DNA packaged in bacteriophage capsids. An alternative model

29 October 2018

1 reference

12 December 2020

Testing models of the arrangement of DNA inside bacteriophage λ by crosslinking the packaged DNA

1 reference

12 December 2020

Thermodynamics of DNA packaging inside a viral capsid: the role of DNA intrinsic thickness

1 reference

12 December 2020

Bacteriophage P2 and P4 morphogenesis: structure and function of the connector

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0409323102

1 reference

29 July 2017

0 references

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29 July 2017

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