(Q34671668)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

0 references

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Karen Lam

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

Gabriela V Cohen Freue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Anna Meredith

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Derek Smith

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Axel Bergman

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Mayu Sasaki

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Zsuzsanna Hollander

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Nina Opushneva

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Mandeep Takhar

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

David Lin

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Janet Wilson-McManus

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Paul A Keown

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Christoph H Borchers

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Bruce McManus

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Raymond T Ng

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

W Robert McMaster

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

Biomarkers in Transplantation and the NCE CECR Prevention of Organ Failure Centre of Excellence Teams

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

publication date

4 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

28 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

page(s)

e1002963

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

28 February 2020

copyright license

start time

4 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3617196

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Computational mass spectrometry-based proteomics

7 July 2018

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Clinical and genetic association of serum ceruloplasmin with cardiovascular risk.

7 July 2018

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A targeted proteomics-based pipeline for verification of biomarkers in plasma

7 July 2018

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A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.

7 July 2018

1 reference

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The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline

7 July 2018

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Proteomic signatures in plasma during early acute renal allograft rejection

7 July 2018

1 reference

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Adiponectin inhibits allograft rejection in murine cardiac transplantation

7 July 2018

1 reference

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Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels into in vitro diagnostics?

7 July 2018

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Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma

7 July 2018

1 reference

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Pivotal evaluation of the accuracy of a biomarker used for classification or prediction: standards for study design

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

Approaches to dimensionality reduction in proteomic biomarker studies

7 July 2018

1 reference

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Mass spectrometry is only one piece of the puzzle in clinical proteomics

7 July 2018

1 reference

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Protein biomarker discovery and validation: the long and uncertain path to clinical utility

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

Adiponectin: a key adipocytokine in metabolic syndrome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling.

7 July 2018

1 reference

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Revision of the 1990 working formulation for the standardization of nomenclature in the diagnosis of heart rejection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

Significance analysis of time course microarray experiments

7 July 2018

1 reference

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ROCR: visualizing classifier performance in R

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

The roles of multiple proteomic platforms in a pipeline for new diagnostics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3617196

Interpretation of shotgun proteomic data: the protein inference problem

7 July 2018

1 reference

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The International Protein Index: an integrated database for proteomics experiments

7 July 2018

1 reference

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Bidirectional relation between inflammation and coagulation

7 July 2018

1 reference

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Use of proteomics to discover novel markers of cardiac allograft rejection

7 July 2018

1 reference

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T-Cell Allorecognition and Transplant Rejection: A Summary and Update

7 July 2018

1 reference

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The human plasma proteome: history, character, and diagnostic prospects

7 July 2018

1 reference

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Missing value estimation methods for DNA microarrays

7 July 2018

1 reference

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Biomarkers and surrogate endpoints: preferred definitions and conceptual framework

7 July 2018

1 reference

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7 July 2018

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21 January 2018

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21 January 2018

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The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

21 January 2018

1 reference

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Identification and characterization of the Sulfolobus solfataricus P2 proteome.

21 January 2018

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GlobalANCOVA: exploration and assessment of gene group effects

21 January 2018

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21 January 2018

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An introduction to ROC analysis

21 January 2018

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iTRAQ experimental design for plasma biomarker discovery

21 January 2018

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Probrain natriuretic peptide and C-reactive protein as markers of acute rejection, allograft vasculopathy, and mortality in heart transplantation

21 January 2018

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Detection of cardiac allograft rejection and response to immunosuppressive therapy with peripheral blood gene expression.

21 January 2018

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Detection of cardiac allograft rejection by real-time PCR analysis of circulating mononuclear cells

21 January 2018

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Whole blood genomic biomarkers of acute cardiac allograft rejection

21 January 2018

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Role of statins in the management of dyslipidemia after cardiac transplant: randomized controlled trial comparing the efficacy and the safety of atorvastatin with pravastatin

21 January 2018

1 reference

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Monitoring of heart allograft rejection by simultaneous measurement of serum beta 2-microglobulin and urinary neopterin

26 October 2018

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12 December 2020

The immunological role of lipid transfer/metabolic proteins in liver transplantation tolerance

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12 December 2020

Beta-2 microglobulin in heart transplanted patients

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12 December 2020

Rationale and application of beta-2-microglobulin measurements to detect acute transplant rejection

1 reference

12 December 2020

Experimental design for gene expression microarrays

1 reference

12 December 2020

Beta 2 microglobulins in rejection and cytomegalovirus infection in a cardiac transplant recipient

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12 December 2020

10.1371/JOURNAL.PCBI.1002963

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/FreueMSBSLHOTLWBKBMNM13

28 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

23592955

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23592955%20AND%20SRC:MED&resulttype=core&format=json