(Q34697432)

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Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

0 references

mutational analysis

1 reference

based on heuristic

inferred from title

Shewanella oneidensis

object named as

Shewanella oneidensis

1 reference

based on heuristic

inferred from title

5

object named as

Jizhong Zhou

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

author name string

Haichun Gao

1

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Zamin K Yang

2

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Liyou Wu

3

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Dorothea K Thompson

4

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

language of work or name

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publication date

1 June 2006

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Journal of Bacteriology

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

188

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

4560-4569

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Microarray data analysis: from disarray to consolidation and consensus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Universal stress proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Low-temperature growth of Shewanella oneidensis MR-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Global transcriptome analysis of the heat shock response of Shewanella oneidensis

1 reference

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7 July 2018

Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Novel phenotypes of Escherichia coli tat mutants revealed by global gene expression and phenotypic analysis

1 reference

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7 July 2018

Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Genomic DNA as a cohybridization standard for mammalian microarray measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Recent developments in bacterial cold-shock response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Cold Shock Response and Major Cold Shock Proteins of Vibrio cholerae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Transcriptional and post-transcriptional control of cold-shock genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Bacterial cold shock responses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

A novel stress-response protein that binds at the ribosomal subunit interface and arrests translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

The bacterial universal stress protein: function and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Selective expression of the beta-subunit of nucleoid-associated protein HU during cold shock in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Structure of the universal stress protein of Haemophilus influenzae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

DNA topoisomerases: structure, function, and mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Escherichia coli CspA-family RNA chaperones are transcription antiterminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Plant glycine-rich proteins: a family or just proteins with a common motif?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Activities of cold-shock domain proteins in translation control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Effect of cold shock on lipid A biosynthesis in Escherichia coli. Induction At 12 degrees C of an acyltransferase specific for palmitoleoyl-acyl carrier protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Cold-active serine alkaline protease from the psychrotrophic bacterium Shewanella strain ac10: gene cloning and enzyme purification and characterization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Effect of temperature on in vivo protein synthetic capacity in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Some like it cold: response of microorganisms to cold shock

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

RbfA, a 30S ribosomal binding factor, is a cold-shock protein whose absence triggers the cold-shock response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Isolation and properties of a mutant of Escherichia coli with an insertional inactivation of the uspA gene, which encodes a universal stress protein

1 reference

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A biochemical study of the intermediary carbon metabolism of Shewanella putrefaciens

1 reference

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The cold-shock response--a hot topic

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Major cold shock protein of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

Function of a relaxed-like state following temperature downshifts in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

DNA gyrase, CS7.4, and the cold shock response in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

7 July 2018

The ribosome-associated inhibitor A reduces translation errors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

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Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria

1 reference

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26 October 2018

Genome-wide transcriptional profiling of the Bacillus subtilis cold-shock response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

26 October 2018

A superfamily of proteins that contain the cold-shock domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

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SecDF of Bacillus subtilis, a molecular Siamese twin required for the efficient secretion of proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482949

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Changes in DNA supertwist as a response of Bacillus subtilis towards different kinds of stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/16740962

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modulation of the thermosensing profile of the Escherichia coli aspartate receptor tar by covalent modification of its methyl-accepting sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/16740962

12 December 2020

based on heuristic

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Chaperone properties of bacterial elongation factor EF-Tu

1 reference

https://pubmed.ncbi.nlm.nih.gov/16740962

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based on heuristic

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The nucleoid-associated DNA-binding protein H-NS is required for the efficient adaptation of Escherichia coli K-12 to a cold environment

1 reference

https://pubmed.ncbi.nlm.nih.gov/16740962

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.01908-05

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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