(Q34699840)

4 August 2017

title

Thermodynamic contributions of single internal rA·dA, rC·dC, rG·dG and rU·dT mismatches in RNA/DNA duplexes (English)

1 reference

4 August 2017

Norman E Watkins

1

1 reference

4 August 2017

William J Kennelly

2

1 reference

4 August 2017

Mike J Tsay

3

1 reference

4 August 2017

Astrid Tuin

4

1 reference

4 August 2017

Lara Swenson

5

1 reference

4 August 2017

Hyung-Ran Lee

6

1 reference

4 August 2017

Svetlana Morosyuk

7

1 reference

4 August 2017

Donald A Hicks

8

1 reference

4 August 2017

John Santalucia

9

1 reference

4 August 2017

language of work or name

English

0 references

publication date

10 November 2010

1 reference

4 August 2017

published in

Nucleic Acids Research

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4 August 2017

volume

39

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4 August 2017

issue

5

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4 August 2017

page(s)

1894-1902

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Creative Commons Attribution-NonCommercial 2.5 Generic

4 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

RNA Internal Loops with Tandem AG Pairs: The Structure of the 5′G AG U/3′U GA G Loop Can Be Dramatically Different from Others, Including 5′A AG U/3′U GA A

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Increased toll-like receptor (TLR) activation and TLR ligands in recently diagnosed type 2 diabetic subjects

7 July 2018

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Time-dependent reduction of glutamine synthetase in retina of diabetic rats

7 July 2018

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Filling the gap in LNA antisense oligo gapmers: the effects of unlocked nucleic acid (UNA) and 4'-C-hydroxymethyl-DNA modifications on RNase H recruitment and efficacy of an LNA gapmer

7 July 2018

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Northern blot analysis for detection and quantification of RNA in pancreatic cancer cells and tissues

7 July 2018

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Design and application of noncontinuously binding probes used for haplotyping and genotyping

7 July 2018

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Application of the Invader RNA assay to the polarity of vertebrate mRNA decay.

7 July 2018

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Gene expression profiling during Forskolin induced differentiation of BeWo cells by differential display RT-PCR.

7 July 2018

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Physical principles and visual-OMP software for optimal PCR design

7 July 2018

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Taking control of gene expression with light-activated oligonucleotides.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Cascade of transcriptional induction and repression during IL-2 deprivation-induced apoptosis.

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

True antisense oligonucleotides with modified nucleotides restricted in the N-conformation

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

The thermodynamics of DNA structural motifs

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Force-induced melting of the DNA double helix. 2. Effect of solution conditions

7 July 2018

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Thermodynamic parameters for DNA sequences with dangling ends

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

NMR solution structure of a DNA dodecamer containing single G.T mismatches

7 July 2018

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Developments in quantitative PCR.

7 July 2018

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Thermodynamics of internal C.T mismatches in DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

In situ hybridization: methods and applications

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Polymer supported DNA synthesis using hydroxybenzotriazole activated phosphotriester intermediates.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Identification of interferon-modulated proliferation-related cDNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Polymer-supported RNA synthesis and its application to test the nearest-neighbor model for duplex stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Improved free-energy parameters for predictions of RNA duplex stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

A field-dissociation relation for polyelectrolytes with an application to field-induced conformational changes of polynucleotides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Thermodynamic characterization of single mismatches found in naturally occurring RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Two point mutations identified in emmer wheat generate null Wx-A1 alleles.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

An invasive cleavage assay for direct quantitation of specific RNAs.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Enthalpy-entropy compensation in DNA melting thermodynamics

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061078

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

26 October 2018

1 reference

12 December 2020

Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices

1 reference

12 December 2020

Thermodynamics of single mismatches in RNA duplexes

1 reference

12 December 2020

Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes

1 reference

12 December 2020

Sequence context and thermodynamic stability of a single base pair mismatch in short deoxyoligonucleotide duplexes

1 reference

12 December 2020

Structure of influenza a virus promoter and its implications for viral RNA synthesis

1 reference

12 December 2020

Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes

1 reference

12 December 2020

Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

1 reference

12 December 2020

Conformational properties of the G.G mismatch in d(CGCGAATTGGCG)2 determined by NMR

1 reference

12 December 2020

Processing of mRNA by ribonuclease III regulates expression of gene 1.2 of bacteriophage T7

1 reference

12 December 2020

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

12 December 2020

Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

12 December 2020

Comparison of the thermodynamic stabilities and solution conformations of DNA.RNA hybrids containing purine-rich and pyrimidine-rich strands with DNA and RNA duplexes

1 reference

12 December 2020

Solution structure of two mismatches G.G and I.I in the K-ras gene context by nuclear magnetic resonance and molecular dynamics

1 reference

12 December 2020

Possible origin of differences between van't Hoff and calorimetric enthalpy estimates

1 reference

12 December 2020

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKQ905

1 reference

4 August 2017

1 reference

4 August 2017

1 reference