(Q34714060)

4 August 2017

title

MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing (English)

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4 August 2017

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3

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4 August 2017

Stinus Lindgreen

1

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Paul P. Gardner

object named as

Paul P Gardner

series ordinal

2

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language of work or name

English

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publication date

15 November 2007

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4 August 2017

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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4 August 2017

volume

23

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4 August 2017

issue

24

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4 August 2017

page(s)

3304-3311

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Evolutionary patterns of non-coding RNAs

4 August 2017

cites work

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Automated de novo prediction of native-like RNA tertiary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

A statistical sampling algorithm for RNA secondary structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

A benchmark of multiple sequence alignment programs upon structural RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

21 January 2018

Abstract shapes of RNA

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Finding the most significant common sequence and structure motifs in a set of RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Rfam: annotating non-coding RNAs in complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Monte Carlo sampling methods using Markov chains and their applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Vienna RNA secondary structure server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Alignment of RNA base pairing probability matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Secondary structure prediction for aligned RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

RNA structure: bioinformatic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Optimization by Simulated Annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

RNA secondary structure prediction using stochastic context-free grammars and evolutionary history

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Pfold: RNA secondary structure prediction using stochastic context-free grammars

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Measuring covariation in RNA alignments: physical realism improves information measures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Multiple alignment using simulated annealing: branch point definition in human mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

RNA folding and unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Identification and classification of conserved RNA secondary structures in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Bridging the gap in RNA structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

A comprehensive comparison of multiple sequence alignment programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Multiple structural alignment and clustering of RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM525

10.1093/BIOINFORMATICS/BTM525

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LindgreenGK07

4 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference