(Q34723504)

4 August 2017

Tertiary contacts control switching of the SAM-I riboswitch (English)

1 reference

4 August 2017

2

Karissa Y Sanbonmatsu

1 reference

4 August 2017

1

Scott P Hennelly

1 reference

PubMed ID

21097777

4 August 2017

language of work or name

English

0 references

publication date

19 November 2010

1 reference

4 August 2017

16

1 reference

inferred from page(s)

published in

Nucleic Acids Research

1 reference

4 August 2017

39

1 reference

4 August 2017

6

1 reference

4 August 2017

2416-2431

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

4 August 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

A mechanism for S-adenosyl methionine assisted formation of a riboswitch conformation: a small molecule with a strong arm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Riboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recycling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Structure-function relationships in RNA and RNP enzymes: recent advances

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Folding of the adenine riboswitch

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Mapping nucleic acid structure by hydroxyl radical cleavage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

The kink-turn motif in RNA is dimorphic, and metal ion-dependent

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

7 July 2018

Less isn't always more

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

An mRNA structure in bacteria that controls gene expression by binding lysine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Genetic control by metabolite-binding riboswitches

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

An mRNA structure that controls gene expression by binding S-adenosylmethionine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

The riboswitch-mediated control of sulfur metabolism in bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

Relationship between internucleotide linkage geometry and the stability of RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064774

The kinetics of ligand binding by an adenine-sensing riboswitch

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1096

Compaction of a bacterial group I ribozyme coincides with the assembly of core helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1096

A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1096

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1096

The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21097777

12 December 2020

inferred from PubMed ID database lookup

Chemical probing of RNA by nucleotide analog interference mapping

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21097777

12 December 2020

inferred from PubMed ID database lookup

Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21097777

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKQ1096

1 reference

4 August 2017

1 reference

4 August 2017

1 reference

PubMed ID

21097777