(Q34736508)

4 August 2017

title

The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment (English)

1 reference

4 August 2017

0 references

Subhajyoti De

1

1 reference

4 August 2017

Brent S Pedersen

series ordinal

2

1 reference

4 August 2017

Katerina Kechris

series ordinal

3

1 reference

4 August 2017

publication date

16 August 2013

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Briefings in Bioinformatics

4 August 2017

published in

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4 August 2017

volume

15

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4 August 2017

issue

6

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4 August 2017

page(s)

919-928

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Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

4 August 2017

cites work

1 reference

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

7 July 2018

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Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection

7 July 2018

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Exploring massive, genome scale datasets with the GenometriCorr package

7 July 2018

1 reference

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Unsupervised pattern discovery in human chromatin structure through genomic segmentation

7 July 2018

1 reference

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Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis

7 July 2018

1 reference

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An effective statistical evaluation of ChIPseq dataset similarity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

A co-ordinated interaction between CTCF and ER in breast cancer cells

7 July 2018

1 reference

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Repetitive DNA and next-generation sequencing: computational challenges and solutions

7 July 2018

1 reference

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DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

7 July 2018

1 reference

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7 July 2018

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An integrated ChIP-seq analysis platform with customizable workflows

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

DNA secondary structures and epigenetic determinants of cancer genome evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Tumour evolution inferred by single-cell sequencing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Initial impact of the sequencing of the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

The Genomic HyperBrowser: inferential genomics at the sequence level

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Structure, location and interactions of G‐quadruplexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

On the use of resampling tests for evaluating statistical significance of binding-site co-occurrence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Next-generation genomics: an integrative approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

The landscape of somatic copy-number alteration across human cancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

BEDTools: a flexible suite of utilities for comparing genomic features

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Scoring overlapping and adjacent signals from genome-wide ChIP and DamID assays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

CTCF: master weaver of the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Determining significance of pairwise co-occurrences of events in bursty sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

PLINK: a tool set for whole-genome association and population-based linkage analyses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Comparing segmentations by applying randomization techniques

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Prevalence of quadruplexes in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Role of metazoan mediator proteins in interferon-responsive transcription

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Predicting transcription factor synergism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271068

Using transcription factor binding site co-occurrence to predict regulatory regions

7 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23956260

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIB/BBT053

1 reference

4 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 August 2017

1 reference