(Q34738572)

4 August 2017

title

Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples (English)

1 reference

Bartholomeus van den Bogert

4 August 2017

1 reference

4

Michiel Kleerebezem

0 references

series ordinal

1

object named as

Bartholomeus van den Bogert

0 references

Willem de Vos

series ordinal

2

object named as

Willem M de Vos

1 reference

4 August 2017

Erwin G Zoetendal

3

1 reference

4 August 2017

language of work or name

English

0 references

publication date

21 January 2011

1 reference

Applied and Environmental Microbiology

4 August 2017

published in

1 reference

4 August 2017

volume

77

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4 August 2017

issue

6

1 reference

4 August 2017

page(s)

2071-2080

1 reference

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

4 August 2017

cites work

1 reference

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7 July 2018

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7 July 2018

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7 July 2018

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Human gut microbiome adopts an alternative state following small bowel transplantation

7 July 2018

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Better living through microbial action: the benefits of the mammalian gastrointestinal microbiota on the host

7 July 2018

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Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

7 July 2018

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Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

7 July 2018

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7 July 2018

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7 July 2018

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High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray

7 July 2018

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Potential core species and satellite species in the bacterial community within the rabbit caecum

7 July 2018

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A core gut microbiome in obese and lean twins

7 July 2018

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7 July 2018

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High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.

7 July 2018

1 reference

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Comparative analysis of human gut microbiota by barcoded pyrosequencing

7 July 2018

1 reference

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Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes

7 July 2018

1 reference

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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

7 July 2018

1 reference

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Diversity of the human gastrointestinal tract microbiota revisited.

7 July 2018

1 reference

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Microbial communities in the human small intestine: coupling diversity to metagenomics

7 July 2018

1 reference

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Accuracy and quality of massively parallel DNA pyrosequencing

7 July 2018

1 reference

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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

7 July 2018

1 reference

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New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras

7 July 2018

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The real-time polymerase chain reaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Rapid quantitative profiling of complex microbial populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Genome sequencing in microfabricated high-density picolitre reactors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Elucidating the key member of a linuron-mineralizing bacterial community by PCR and reverse transcription-PCR denaturing gradient gel electrophoresis 16S rRNA gene fingerprinting and cultivation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Diversity of the human intestinal microbial flora

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

ARB: a software environment for sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Molecular ecological analysis of the gastrointestinal microbiota: a review.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Evaluation of three different forward primers by terminal restriction fragment length polymorphism analysis for determination of fecal bifidobacterium spp. in healthy subjects

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Review and re-analysis of domain-specific 16S primers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Streptococcal diversity in oral biofilms with respect to salivary function.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Quantification of bacteria adherent to gastrointestinal mucosa by real-time PCR.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Extensive set of 16S rRNA-based probes for detection of bacteria in human feces

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

A molecular view of the intestinal ecosystem.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Counting the uncountable: statistical approaches to estimating microbial diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

High temporal and inter-individual variation detected in the human ileal microbiota

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

The 'rare biosphere': a reality check

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3067328

Molecular quantification of lactic acid bacteria in fermented milk products using real-time quantitative PCR

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21257804

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.02477-10

1 reference

4 August 2017

1 reference

4 August 2017

1 reference