(Q34749949)

4 August 2017

1 reference

title

Automated detection of remote homology (English)

1 reference

4 August 2017

0 references

1

Sabine Dietmann

1 reference

4 August 2017

Narcis Fernandez-Fuentes

series ordinal

2

1 reference

PubMed ID

12127456

4 August 2017

Liisa Holm

series ordinal

3

1 reference

4 August 2017

1 June 2002

1 reference

Current Opinion in Structural Biology

4 August 2017

1 reference

4 August 2017

12

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4 August 2017

3

1 reference

4 August 2017

362-367

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Mapping the protein universe

4 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

1 reference

7 January 2021

Sialidase-like Asp-boxes: sequence-similar structures within different protein folds

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Getting past appearances: the many-fold consequences of remote homology

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Optimization of a new score function for the detection of remote homologs.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Review: what can structural classifications reveal about protein evolution?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

From fold to function.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

From structure to function: approaches and limitations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Determination of protein function, evolution and interactions by structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Identification of related proteins on family, superfamily and fold level.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Rapid and sensitive sequence comparison with FASTP and FASTA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Profile hidden Markov models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Getting the most from PSI-BLAST.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Pairwise sequence alignment below the twilight zone

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Combination of threading potentials and sequence profiles improves fold recognition.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Sequence-based detection of distantly related proteins with the same fold

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Comparison of sequence profiles. Strategies for structural predictions using sequence information

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Picasso: generating a covering set of protein family profiles.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Phylogenetic information improves homology detection.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Homology detection via family pairwise search

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Unification of protein families.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

SAWTED: structure assignment with text description--enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Identification of homology in protein structure classification.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Protein structure similarities.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Rapid evolution of bacterial catabolic enzymes: a case study with atrazine chlorohydrolase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

The closest BLAST hit is often not the nearest neighbor.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Searching the protein structure databank with weak sequence patterns and structural constraints.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Prediction of the coupling specificity of G protein coupled receptors to their G proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

A method to predict functional residues in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Prediction and confirmation of a site critical for effector regulation of RGS domain activity

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Surface Map Comparison: Studying Function Diversity of Homologous Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

AI-based algorithms for protein surface comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

Prediction of functionally important residues based solely on the computed energetics of protein structure.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900332-9

7 January 2021

10.1016/S0959-440X(02)00332-9

Identifiers

DOI

1 reference

4 August 2017

1 reference

PubMed ID

12127456