(Q34770113)

4 August 2017

Detection of new genes in a bacterial genome using Markov models for three gene classes (English)

1 reference

4 August 2017

6

1 reference

4 August 2017

3

E V Koonin

1 reference

4 August 2017

M Borodovsky

1

1 reference

4 August 2017

J D McIninch

series ordinal

2

1 reference

4 August 2017

K E Rudd

series ordinal

4

1 reference

4 August 2017

C Médigue

series ordinal

5

1 reference

4 August 2017

language of work or name

English

0 references

publication date

1 September 1995

1 reference

4 August 2017

Nucleic Acids Research

1 reference

4 August 2017

23

1 reference

4 August 2017

17

1 reference

4 August 2017

3554-3562

1 reference

Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes

4 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Issues in searching molecular sequence databases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

A hidden Markov model that finds genes in E. coli DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

A simple tool to search for sequence motifs that are conserved in BLAST outputs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Codon catalog usage is a genome strategy modulated for gene expressivity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Codon usage in bacteria: correlation with gene expressivity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Codon usage and tRNA content in unicellular and multicellular organisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Merging of distance matrices and classification by dynamic clustering.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Codon preference and primary sequence structure in protein-coding regions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Evidence for horizontal gene transfer in Escherichia coli speciation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Assessment of protein coding measures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

First and second moment of counts of words in random texts generated by Markov chains.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Mutational analysis of the Escherichia coli serB promoter region reveals transcriptional linkage to a downstream gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Large scale bacterial gene discovery by similarity search.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307237

Contamination of cDNA sequences in databases

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/7567469

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New genes in old sequence: a strategy for finding genes in the bacterial genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/7567469

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/23.17.3554

1 reference

4 August 2017

1 reference

4 August 2017

1 reference