(Q34773388)

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A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 August 2017

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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Matthieu Leray

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Europe PubMed Central

PubMed publication ID

4 August 2017

6

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Vincent Ranwez

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Europe PubMed Central

PubMed publication ID

4 August 2017

author name string

Joy Y Yang

2

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Europe PubMed Central

PubMed publication ID

4 August 2017

Christopher P Meyer

3

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Europe PubMed Central

PubMed publication ID

4 August 2017

Suzanne C Mills

4

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Natalia Agudelo

5

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Joel T Boehm

7

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Europe PubMed Central

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4 August 2017

Ryuji J Machida

8

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4 August 2017

publication date

14 June 2013

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Europe PubMed Central

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4 August 2017

Frontiers in Zoology

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Europe PubMed Central

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4 August 2017

10

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Europe PubMed Central

PubMed publication ID

4 August 2017

34

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Europe PubMed Central

PubMed publication ID

4 August 2017

Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two coral reef fish species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Predator crown-of-thorns starfish (Acanthaster planci) outbreak, mass mortality of corals, and cascading effects on reef fish and benthic communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Acanthaster planci outbreak: decline in coral health, coral size structure modification and consequences for obligate decapod assemblages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Towards next-generation biodiversity assessment using DNA metabarcoding

1 reference

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7 July 2018

Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia

1 reference

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7 July 2018

Who is eating what: diet assessment using next generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

PCR enrichment techniques to identify the diet of predators.

1 reference

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7 July 2018

DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches

1 reference

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7 July 2018

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons

1 reference

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7 July 2018

Molecular diet analysis of two african free-tailed bats (molossidae) using high throughput sequencing

1 reference

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7 July 2018

UCHIME improves sensitivity and speed of chimera detection

1 reference

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7 July 2018

Field guide to next-generation DNA sequencers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Removing noise from pyrosequenced amplicons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Exploring the use of cytochrome oxidase c subunit 1 (COI) for DNA barcoding of free-living marine nematodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Second-generation environmental sequencing unmasks marine metazoan biodiversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

An in silico approach for the evaluation of DNA barcodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Barcoding bamboozled by bacteria: convergence to metazoan mitochondrial primer targets by marine microbes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Zooplankton diversity analysis through single-gene sequencing of a community sample

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

A universal DNA mini-barcode for biodiversity analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Quantification of damage in DNA recovered from highly degraded samples--a case study on DNA in faeces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

Biological identifications through DNA barcodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3686579

7 July 2018

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1 reference

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7 July 2018

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1 reference

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1 reference

https://api.crossref.org/works/10.1186%2F1742-9994-10-34

21 January 2018

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

1 reference

https://api.crossref.org/works/10.1186%2F1742-9994-10-34

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1 reference

https://api.crossref.org/works/10.1186%2F1742-9994-10-34

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Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus).

1 reference

https://api.crossref.org/works/10.1186%2F1742-9994-10-34

21 January 2018

Statistical assignment of DNA sequences using Bayesian phylogenetics

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https://api.crossref.org/works/10.1186%2F1742-9994-10-34

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21 January 2018

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10.1186/1742-9994-10-34

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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