(Q34777136)

English

Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms.

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scholarly article

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Europe PubMed Central

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7 January 2020

Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms (English)

1 reference

Europe PubMed Central

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7 January 2020

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Andrey V. Mardanov

1

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7 January 2020

Nikolai V. Ravin

2

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7 January 2020

author name string

Boris B Kuznetsov

3

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7 January 2020

Tahir H Samigullin

4

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7 January 2020

Andrey S Antonov

5

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7 January 2020

Tatiana V Kolganova

6

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7 January 2020

Konstantin G Skyabin

7

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7 January 2020

publication date

8 May 2008

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7 January 2020

Journal of Molecular Evolution

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7 January 2020

66

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7 January 2020

555-564

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7 January 2020

6

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7 January 2020

https://scigraph.springernature.com/pub.10.1007/s00239-008-9091-7

0 references

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9091-7

21 January 2018

Engineering the plastid genome of higher plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automatic annotation of organellar genomes with DOGMA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chloroplast genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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The role of RNA editing in conservation of start codons in chloroplast genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Rapid isolation of high molecular weight plant DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring confidence sets of possibly misspecified gene trees.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ebb and flow of the chloroplast inverted repeat

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Rooting a phylogenetic tree with nonreversible substitution models

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular phylogenetic relationships among Lemnaceae and Araceae using the chloroplast trnL-trnF intergenic spacer.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Editing of a chloroplast mRNA by creation of an initiation codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative organization of chloroplast genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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MODELTEST: testing the model of DNA substitution

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of Acorus calamus chloroplast genome and its phylogenetic implications.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Evolutionary re-organisation of a large operon in adzuki bean chloroplast DNA caused by inverted repeat movement.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

1 reference

https://pubmed.ncbi.nlm.nih.gov/18463914

12 December 2020

based on heuristic

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Identifiers

10.1007/S00239-008-9091-7

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18463914%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

Dimensions Publication ID

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1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18463914%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

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