(Q34781585)

4 August 2017

title

Occurrence, solution structure and stability of DNA hairpins stabilized by a GA/CG helix unit (English)

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4 August 2017

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P Sandusky

1

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4 August 2017

E W Wooten

2

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4 August 2017

A V Kurochkin

3

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4 August 2017

T Kavanaugh

4

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4 August 2017

W Mandecki

5

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4 August 2017

E R Zuiderweg

6

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4 August 2017

language of work or name

English

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publication date

1 November 1995

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4 August 2017

number of pages

9

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inferred from page(s)

published in

Nucleic Acids Research

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4 August 2017

volume

23

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4 August 2017

issue

22

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4 August 2017

page(s)

4717-4725

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The conformation of loop E of eukaryotic 5S ribosomal RNA.

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

NMR studies of G:A mismatches in oligodeoxyribonucleotide duplexes modelled after ribozymes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Most compact hairpin-turn structure exerted by a short DNA fragment, d(GCGAAGC) in solution: an extraordinarily stable structure resistant to nucleases and heat

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Nuclease resistance of an extraordinarily thermostable mini-hairpin DNA fragment, d(GCGAAGC) and its application to in vitro protein synthesis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Two-base DNA hairpin-loop structures in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Three-dimensional structure of a hammerhead ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

A common RNA loop motif as a docking module and its function in the hammerhead ribozyme

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Formation of sheared G:A base pairs in an RNA duplex modelled after ribozymes, as revealed by NMR.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Predicting DNA duplex stability from the base sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

The contribution of DNA single-stranded order to the thermodynamics of duplex formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

A thermodynamic study of unusually stable RNA and DNA hairpins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

The electrostatic contribution to DNA base-stacking interactions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

GNRA tetraloops make a U-turn

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307449

Dynamics of DNA oligomers

26 October 2018

1 reference

12 December 2020

Solution structure of an oncogenic DNA duplex containing a G.A mismatch

1 reference

12 December 2020

Base pairing geometry in GA mismatches depends entirely on the neighboring sequence

1 reference

12 December 2020

Solution structure of a GA mismatch DNA sequence, d(CCATGAATGG)2, determined by 2D NMR and structural refinement methods

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/23.22.4717

1 reference

4 August 2017

1 reference

4 August 2017

1 reference