(Q34789360)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Suhaida Selamat

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Benjamin P Berman

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Zea Borok

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

12

Ite A Laird-Offringa

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

3

Megan E Rieger

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

author name string

Beiyun Zhou

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Mickael Dubourd

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Xiaohui Fang

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Sean K Lynch

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Theresa Ryan Stueve

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

Kimberly D Siegmund

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

publication date

20 June 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

page(s)

e1003513

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

4 March 2020

copyright license

start time

20 June 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

LIMMA

2 references

22 June 2022

https://europepmc.org/article/PMC/3688557

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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8 July 2018

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8 July 2018

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Regulated gene expression in cultured type II cells of adult human lung

8 July 2018

1 reference

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Beta-catenin/T-cell factor signaling is activated during lung injury and promotes the survival and migration of alveolar epithelial cells

8 July 2018

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8 July 2018

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8 July 2018

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The angiogenic factor midkine is regulated by dexamethasone and retinoic acid during alveolarization and in alveolar epithelial cells

8 July 2018

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

8 July 2018

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

8 July 2018

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8 July 2018

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GATA-6 mediates transcriptional activation of aquaporin-5 through interactions with Sp1.

8 July 2018

1 reference

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8 July 2018

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Rat aquaporin-5 4.3-kb 5'-flanking region differentially regulates expression in salivary gland and lung in vivo

8 July 2018

1 reference

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Polycomb complexes and epigenetic states

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Differentiation of embryonic stem cells to clinically relevant populations: lessons from embryonic development

8 July 2018

1 reference

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Foxp2 inhibits Nkx2.1-mediated transcription of SP-C via interactions with the Nkx2.1 homeodomain

8 July 2018

1 reference

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Modulators of the structural dynamics of the retinoid X receptor to reveal receptor function

8 July 2018

1 reference

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Role of PPARs and Retinoid X Receptors in the Regulation of Lung Maturation and Development

8 July 2018

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A chromatin landmark and transcription initiation at most promoters in human cells

8 July 2018

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

8 July 2018

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High-resolution profiling of histone methylations in the human genome

8 July 2018

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8 July 2018

The mammalian epigenome

1 reference

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

8 July 2018

1 reference

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Differentiated human alveolar epithelial cells and reversibility of their phenotype in vitro

8 July 2018

1 reference

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Soluble TNF mediates the transition from pulmonary inflammation to fibrosis

8 July 2018

1 reference

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Polycomb silencers control cell fate, development and cancer

8 July 2018

1 reference

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Locus-wide chromatin remodeling and enhanced androgen receptor-mediated transcription in recurrent prostate tumor cells

8 July 2018

1 reference

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Alterations in gene expression in T1 alpha null lung: a model of deficient alveolar sac development

8 July 2018

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

8 July 2018

1 reference

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Stage-specific regulation of respiratory epithelial cell differentiation by Foxa1

8 July 2018

1 reference

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Histone deacetylation in epigenetics: an attractive target for anticancer therapy

8 July 2018

1 reference

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Compensatory roles of Foxa1 and Foxa2 during lung morphogenesis

8 July 2018

1 reference

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beta-Catenin is required for specification of proximal/distal cell fate during lung morphogenesis

8 July 2018

1 reference

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MATCH: A tool for searching transcription factor binding sites in DNA sequences

8 July 2018

1 reference

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T1alpha, a lung type I cell differentiation gene, is required for normal lung cell proliferation and alveolus formation at birth

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Retinoid receptors in the developing human lung

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Histone methyltransferase activity of a Drosophila Polycomb group repressor complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Expression of Tcf/Lef and sFrp and localization of beta-catenin in the developing mouse lung

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Alveolar epithelial type II cell: defender of the alveolus revisited

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Caveolin and its cellular and subcellular immunolocalisation in lung alveolar epithelium: implications for alveolar epithelial type I cell function.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Aquaporins in complex tissues. II. Subcellular distribution in respiratory and glandular tissues of rat

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Transepithelial transport by pulmonary alveolar type II cells in primary culture

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Tight monolayers of rat alveolar epithelial cells: bioelectric properties and active sodium transport.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Epigenetic regulation of genes during development: a conserved theme from flies to mammals.

8 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Nucleosomes unfold completely at a transcriptionally active promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Differentiation of human alveolar epithelial cells in primary culture: morphological characterization and synthesis of caveolin-1 and surfactant protein-C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Fluid transport across cultured rat alveolar epithelial cells: a novel in vitro system

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Identification of three genes of known function expressed by alveolar epithelial type I cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Pepsinogen C: a type 2 cell-specific protease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Mice bearing deletions of retinoic acid receptors demonstrate reduced lung elastin and alveolar numbers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Retinoic acid induces alveolar regeneration in the adult mouse lung

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Prenatal treatment with retinoic acid accelerates type 1 alveolar cell proliferation of the hypoplastic lung in the nitrofen model of congenital diaphragmatic hernia

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Prenatal treatment with retinoic acid promotes pulmonary alveologenesis in the nitrofen model of congenital diaphragmatic hernia

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

The proliferative effects of retinoic acid on primary cultures of adult rat type II pneumocytes depend upon cell density.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

The effect of antenatal steroids on fetal lung maturation between the 34th and 36th week of pregnancy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Androgen receptor activity at the prostate specific antigen locus: steroidal and non-steroidal mechanisms.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

Modulation of t1alpha expression with alveolar epithelial cell phenotype in vitro.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688557

A Novel Method for Isolating Individual Cellular Components from the Adult Human Distal Lung

26 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003513

Caveolin-1 expression and caveolae biogenesis during cell transdifferentiation in lung alveolar epithelial primary cultures

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23818859

12 December 2020

inferred from PubMed ID database lookup

Differential expression of CCAAT enhancer binding protein family in rat alveolar epithelial cell proliferation and in acute lung injury

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23818859

12 December 2020

inferred from PubMed ID database lookup

Type I cell-like morphology in tight alveolar epithelial monolayers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23818859

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003513

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818859%20AND%20SRC:MED&resulttype=core&format=json