(Q34799988)

4 August 2017

title

Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution (English)

1 reference

4 August 2017

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5

Mark Gerstein

1 reference

4 August 2017

Christine Jacobs-Wagner

7

object named as

Christine Jacobs-Wagner

1 reference

4 August 2017

Karla D Passalacqua

2

1 reference

ORCID Public Data File 2021

author name string

Gang Fang

1

1 reference

4 August 2017

Jason Hocking

3

1 reference

4 August 2017

Paula Montero Llopis

4

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4 August 2017

Nicholas H Bergman

6

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4 August 2017

language of work or name

English

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publication date

5 July 2013

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4 August 2017

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4 August 2017

volume

14

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4 August 2017

page(s)

450

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describes a project that uses

4 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

WGCNA

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WGCNA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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8 July 2018

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8 July 2018

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8 July 2018

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Getting in the loop: regulation of development in Caulobacter crescentus.

8 July 2018

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8 July 2018

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Temporal controls of the asymmetric cell division cycle in Caulobacter crescentus

8 July 2018

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8 July 2018

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Structure and complexity of a bacterial transcriptome.

8 July 2018

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8 July 2018

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8 July 2018

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Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

8 July 2018

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Small non-coding RNAs in Caulobacter crescentus

8 July 2018

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Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome

8 July 2018

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Persistence drives gene clustering in bacterial genomes

8 July 2018

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Integration of biological networks and gene expression data using Cytoscape

8 July 2018

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A DNA methylation ratchet governs progression through a bacterial cell cycle

8 July 2018

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High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.

8 July 2018

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Conservation and evolution of gene coexpression networks in human and chimpanzee brains

8 July 2018

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Transcriptional profiling of the Bacillus anthracis life cycle in vitro and an implied model for regulation of spore formation

8 July 2018

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

8 July 2018

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DnaA coordinates replication initiation and cell cycle transcription in Caulobacter crescentus

8 July 2018

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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

8 July 2018

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How essential are nonessential genes?

8 July 2018

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Evidence against the selfish operon theory

8 July 2018

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Oscillating global regulators control the genetic circuit driving a bacterial cell cycle

8 July 2018

1 reference

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Universality and flexibility in gene expression from bacteria to human

8 July 2018

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8 July 2018

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Proteome of Caulobacter crescentus cell cycle publicly accessible on SWICZ server

8 July 2018

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A gene-coexpression network for global discovery of conserved genetic modules

8 July 2018

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Phylogenomics: intersection of evolution and genomics

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

Testing for phylogenetic signal in comparative data: behavioral traits are more labile

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

Complete genome sequence of Caulobacter crescentus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

Global analysis of the genetic network controlling a bacterial cell cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

Sulfur metabolism in Escherichia coli and related bacteria: facts and fiction.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

The use of gene clusters to infer functional coupling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

Envelope-associated nucleoid from Caulobacter crescentus stalked and swarmer cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3829707

Inference of large-scale gene regulatory networks using regression-based network approach

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-14-450

Transcript mapping with high-density oligonucleotide tiling arrays

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-14-450

Natural selection promotes the conservation of linkage of co-expressed genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23829427

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-450

1 reference

4 August 2017

1 reference

4 August 2017

1 reference