(Q34816620)

4 August 2017

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title

The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription (English)

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4 August 2017

Dorothy A Erie

1

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PubMed ID

12213654

4 August 2017

language of work or name

English

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publication date

1 September 2002

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Biochimica et Biophysica Acta

4 August 2017

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4 August 2017

1577

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4 August 2017

224-239

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4 August 2017

2

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Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation.

4 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Basic mechanisms of transcript elongation and its regulation

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Shifting RNA polymerase into overdrive

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

RNA polymerase unveiled

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

RNA polymerase as a molecular motor

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

An integrated model of the transcription complex in elongation, termination, and editing.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Footprinting analysis of mammalian RNA polymerase II along its transcript: an alternative view of transcription elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Discontinuous mechanism of transcription elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Coupling between transcription termination and RNA polymerase inchworming.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

NusG overexpression inhibits Rho-dependent termination in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Transcription elongation and human disease

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Phage HK022 Nun protein arrests transcription on phage lambda DNA in vitro and competes with the phage lambda N antitermination protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Antiterminator-dependent modulation of transcription elongation rates by NusB and NusG

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanism of intrinsic transcription termination and antitermination

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Regulation of rho-dependent transcription termination by NusG is specific to the Escherichia coli elongation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

The DNA replication fork can pass RNA polymerase without displacing the nascent transcript

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

A transcribing RNA polymerase molecule survives DNA replication without aborting its growing RNA chain

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Transcriptional fidelity and proofreading by RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Analysis of RNA chain elongation and termination by Saccharomyces cerevisiae RNA polymerase III.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Interactions of bacteriophage T4-coded primase (gp61) with the T4 replication helicase (gp41) and DNA in primosome formation

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

GreA protein: a transcription elongation factor from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Purification and assay of Escherichia coli transcript cleavage factors GreA and GreB.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Nonequilibrium mechanism of transcription termination from observations of single RNA polymerase molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Transcript cleavage factors from E. coli.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Transcript cleavage by Thermus thermophilus RNA polymerase. Effects of GreA and anti-GreA factors

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Inhibition of transcription of cytosine-containing DNA in vitro by the alc gene product of bacteriophage T4.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

A structural model of transcription elongation

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Protein-RNA interactions in the active center of transcription elongation complex

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

A model for the mechanism of polymerase translocation

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Reversible stalling of transcription elongation complexes by high pressure

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

31P NMR studies of the interaction of ATP with RNA polymerase from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Detection of nucleoside triphosphate binding sites of two types in Escherichia coli RNA-polymerase by affinity labeling

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanism of ribonucleic acid chain initiation. Molecular pulse-labeling study of ribonucleic acid syntheses on T7 deoxyribonucleic acid template

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanism of ribonucleic acid chain initiation. 2. A real time analysis of initiation by the rapid kinetic technique

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanism of ribonucleic acid chain initiation. 1. A non-steady-state study of ribonucleic acid synthesis without enzyme turnover

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Three-dimensional structure of E. coli core RNA polymerase: promoter binding and elongation conformations of the enzyme.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Purification and initial characterization of RNA polymerase from Thermus thermophilus strain HB8.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected biochemical properties

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Deoxyribonuclease I footprinting of defined complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Virtually unidirectional binding of TBP to the AdMLP TATA box within the quaternary complex with TFIIA and TFIIB.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

RNA polymerase slides home: pause and termination site recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

The RNA polymerase II general elongation factors

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanism and regulation of transcriptional elongation by RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Elongation factor SII-dependent transcription by RNA polymerase II through a sequence-specific DNA-binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Identification of a 3'-->5' exonuclease activity associated with human RNA polymerase II.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanistic model of the elongation complex of Escherichia coli RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Domain organization of Escherichia coli transcript cleavage factors GreA and GreB.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Crystal structure of the GreA transcript cleavage factor from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mapping interactions of Escherichia coli GreB with RNA polymerase and ternary elongation complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Visualization of the binding site for the transcript cleavage factor GreB on Escherichia coli RNA polymerase.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Recombinant Thermus aquaticus RNA polymerase, a new tool for structure-based analysis of transcription.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Conformational coupling in DNA polymerase fidelity

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Kinetic partitioning between the exonuclease and polymerase sites in DNA error correction

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

Mechanistic studies on deoxyribonucleic acid dependent ribonucleic acid polymerase from Escherichia coli using phosphorothioate analogs. 2. The elongation reaction

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4781%2802%2900454-2

7 January 2021

10.1016/S0167-4781(02)00454-2

Identifiers

DOI

1 reference

4 August 2017

1 reference

PubMed ID

12213654