(Q35210067)

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Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release

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scholarly article

1 reference

Europe PubMed Central

7 August 2017

Interaction of a nascent RNA structure with RNA polymerase is required for hairpin-dependent transcriptional pausing but not for transcript release (English)

1 reference

Europe PubMed Central

7 August 2017

author name string

I Artsimovitch

1

1 reference

Europe PubMed Central

7 August 2017

R Landick

2

1 reference

Europe PubMed Central

7 August 2017

publication date

1 October 1998

1 reference

Europe PubMed Central

7 August 2017

Genes & Development

1 reference

Europe PubMed Central

7 August 2017

12

1 reference

Europe PubMed Central

7 August 2017

3110-3122

1 reference

Europe PubMed Central

7 August 2017

19

1 reference

Europe PubMed Central

7 August 2017

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC317188/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Transcriptional pausing at +62 of the HIV-1 nascent RNA modulates formation of the TAR RNA structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Basic mechanisms of transcript elongation and its regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Preferential interaction of the his pause RNA hairpin with RNA polymerase beta subunit residues 904-950 correlates with strong transcriptional pausing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Multiple interactions stabilize a single paused transcription intermediate in which hairpin to 3' end spacing distinguishes pause and termination pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Effects of neutral salts on RNA chain elongation and pausing by Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

RNA polymerase slides home: pause and termination site recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

A model for the mechanism of polymerase translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Quantitative analysis of transcriptional pausing by Escherichia coli RNA polymerase: his leader pause site as paradigm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Transcription termination at intrinsic terminators: the role of the RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Use of complementary DNA oligomers to probe trp leader transcript secondary structures involved in transcription pausing and termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Transcription termination at the tryptophan operon attenuator is decreased in vitro by an oligomer complementary to a segment of the leader transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Terminator-distal sequences determine the in vitro efficiency of the early terminators of bacteriophages T3 and T7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Use of Mono Q high-resolution ion-exchange chromatography to obtain highly pure and active Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Transcript elongation and termination are competitive kinetic processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

New models for the mechanism of transcription elongation and its regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Structure of RNA and DNA chains in paused transcription complexes containing Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

Procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving polymin P precipitation and DNA-cellulose chromatography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

13 July 2018

RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

26 September 2018

The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

26 September 2018

Transcription processivity: protein-DNA interactions holding together the elongation complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

26 September 2018

Transcript cleavage factors from E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

26 September 2018

Coupling between transcription termination and RNA polymerase inchworming.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

26 September 2018

Preparation and Properties of Oligodeoxynucleotides Containing 5-Iodouracil and 5-Bromo- and 5-Iodocytosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=317188

15 November 2018

Escherichia coli deoxyribonucleic acid dependent ribonucleic acid polymerase transcriptional pause sites on SV40 DNA F1

1 reference

https://pubmed.ncbi.nlm.nih.gov/9765211

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A topological model for transcription based on unwinding angle analysis of E. coli RNA polymerase binary, initiation and ternary complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/9765211

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A complementary DNA oligomer releases a transcription pause complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/9765211

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replacement of potassium chloride by potassium glutamate dramatically enhances protein-DNA interactions in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/9765211

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional importance of sequence in the stem-loop of a transcription terminator

1 reference

https://pubmed.ncbi.nlm.nih.gov/9765211

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/9765211

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GAD.12.19.3110

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

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