(Q34818955)

4 August 2017

title

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming. (English)

1 reference

4 August 2017

Sven Thiele

4

0 references

Federica Eduati

Federica Eduati

3

0 references

Thomas Cokelaer

Thomas Cokelaer

5

0 references

Julio Saez-Rodriguez

Julio Saez-Rodriguez

7

0 references

Anne Siegel

6

Anne Siegel

1 reference

4 August 2017

Carito Guziolowski

1

1 reference

4 August 2017

Santiago Videla

2

1 reference

4 August 2017

language of work or name

English

0 references

publication date

12 July 2013

1 reference

4 August 2017

1 reference

4 August 2017

volume

29

1 reference

4 August 2017

issue

18

1 reference

4 August 2017

page(s)

2320-2326

1 reference

describes a project that uses

4 August 2017

Cytoscape

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Using answer set programming to integrate RNA expression with signalling pathway information to infer how mutations affect ageing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Boolean modeling in systems biology: an overview of methodology and applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Measurement and modeling of signaling at the single-cell level

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Mathematical modelling of cell-fate decision in response to death receptor engagement

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Mobyle: a new full web bioinformatics framework

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Systems biology: experimental design

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

Optimization in computational systems biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

A methodology for the structural and functional analysis of signaling and regulatory networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753570

10.1093/BIOINFORMATICS/BTT393

8 July 2018

Identifiers

DOI

1 reference

journals/bioinformatics/GuziolowskiVETCSS13

4 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 August 2017

1 reference